miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23755 5' -58.2 NC_005261.1 + 111761 0.66 0.787616
Target:  5'- -gCUCGuGCAccuGCGcUG-CGCGCCCGGg -3'
miRNA:   3'- caGAGCuCGU---CGU-ACaGCGCGGGCUa -5'
23755 5' -58.2 NC_005261.1 + 106542 0.66 0.768956
Target:  5'- -cCUCG-GCGGCG-GcCGCGUCCGGg -3'
miRNA:   3'- caGAGCuCGUCGUaCaGCGCGGGCUa -5'
23755 5' -58.2 NC_005261.1 + 94034 0.66 0.768956
Target:  5'- uUCUCG-GCGGCccGgCGCGCCCc-- -3'
miRNA:   3'- cAGAGCuCGUCGuaCaGCGCGGGcua -5'
23755 5' -58.2 NC_005261.1 + 16048 0.66 0.759438
Target:  5'- uUCUUGGGCAGCGggccCGCG-CCGAg -3'
miRNA:   3'- cAGAGCUCGUCGUaca-GCGCgGGCUa -5'
23755 5' -58.2 NC_005261.1 + 54367 0.67 0.740069
Target:  5'- gGUCcgCGGGCAGCGgcucGggGCGCCCGc- -3'
miRNA:   3'- -CAGa-GCUCGUCGUa---CagCGCGGGCua -5'
23755 5' -58.2 NC_005261.1 + 70579 0.67 0.730238
Target:  5'- -gCUCGGGCgcgagcgcagcGGCGUG-CGCccGCCCGAa -3'
miRNA:   3'- caGAGCUCG-----------UCGUACaGCG--CGGGCUa -5'
23755 5' -58.2 NC_005261.1 + 2103 0.67 0.700266
Target:  5'- cGUCgCGAGCAGCAgcacgcccUGCGCgCCGAg -3'
miRNA:   3'- -CAGaGCUCGUCGUaca-----GCGCG-GGCUa -5'
23755 5' -58.2 NC_005261.1 + 49633 0.67 0.690148
Target:  5'- cGUCgaCGAGCgAGCGga-UGCGCCCGAg -3'
miRNA:   3'- -CAGa-GCUCG-UCGUacaGCGCGGGCUa -5'
23755 5' -58.2 NC_005261.1 + 127789 0.68 0.679981
Target:  5'- -gCUCGAGCGGCggGcCGgCGCCgCGGc -3'
miRNA:   3'- caGAGCUCGUCGuaCaGC-GCGG-GCUa -5'
23755 5' -58.2 NC_005261.1 + 99011 0.68 0.669775
Target:  5'- cGUCgCGAGCGGCGgcgcggcgGcgCGCGCCCa-- -3'
miRNA:   3'- -CAGaGCUCGUCGUa-------Ca-GCGCGGGcua -5'
23755 5' -58.2 NC_005261.1 + 113457 0.68 0.669775
Target:  5'- gGUCacgaUGAGCGGCGagcUGcUGCGCCCGAa -3'
miRNA:   3'- -CAGa---GCUCGUCGU---ACaGCGCGGGCUa -5'
23755 5' -58.2 NC_005261.1 + 46119 0.68 0.669775
Target:  5'- gGUCcgCGucCAGCAgGUCGcCGCCCGAg -3'
miRNA:   3'- -CAGa-GCucGUCGUaCAGC-GCGGGCUa -5'
23755 5' -58.2 NC_005261.1 + 60837 0.68 0.659537
Target:  5'- aUCaUCG-GCGGCGgcgagGUCGCGCgCCGGg -3'
miRNA:   3'- cAG-AGCuCGUCGUa----CAGCGCG-GGCUa -5'
23755 5' -58.2 NC_005261.1 + 42489 0.68 0.649278
Target:  5'- cGUUUUGcGCGGCGacgcgcGUCGCGCCCGu- -3'
miRNA:   3'- -CAGAGCuCGUCGUa-----CAGCGCGGGCua -5'
23755 5' -58.2 NC_005261.1 + 45395 0.68 0.628726
Target:  5'- -gUUCGuGCAGC-UGUCGUGCCUGc- -3'
miRNA:   3'- caGAGCuCGUCGuACAGCGCGGGCua -5'
23755 5' -58.2 NC_005261.1 + 54943 0.68 0.628726
Target:  5'- cGUCaCGAGCAGC---UCGUGCUCGAa -3'
miRNA:   3'- -CAGaGCUCGUCGuacAGCGCGGGCUa -5'
23755 5' -58.2 NC_005261.1 + 54622 0.7 0.557269
Target:  5'- aGUCUcCGAGCAccgcccGCGUGaugagCGCGCCCGc- -3'
miRNA:   3'- -CAGA-GCUCGU------CGUACa----GCGCGGGCua -5'
23755 5' -58.2 NC_005261.1 + 115407 0.7 0.557269
Target:  5'- cGUCgaccgCGGGCGGCAgccgggGcCGCGgCCCGAg -3'
miRNA:   3'- -CAGa----GCUCGUCGUa-----CaGCGC-GGGCUa -5'
23755 5' -58.2 NC_005261.1 + 65464 0.7 0.537222
Target:  5'- -gCUCGAGCGGCAUGUUuggguugccggGCGCCa--- -3'
miRNA:   3'- caGAGCUCGUCGUACAG-----------CGCGGgcua -5'
23755 5' -58.2 NC_005261.1 + 114345 0.71 0.478778
Target:  5'- -gCUCGAGCGGCGcgugGcCGCGgCCGAg -3'
miRNA:   3'- caGAGCUCGUCGUa---CaGCGCgGGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.