miRNA display CGI


Results 41 - 60 of 872 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23757 3' -63.1 NC_005261.1 + 135507 0.66 0.574326
Target:  5'- uGGCCUcaGCCgACGagUGcCUgACGUGGUGCa -3'
miRNA:   3'- -CCGGG--CGGgUGU--GC-GAgUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 72485 0.66 0.583977
Target:  5'- cGGCCaGCgCCAggaGCGC-CGCGCgaagcgGGCGCc -3'
miRNA:   3'- -CCGGgCG-GGUg--UGCGaGUGCG------CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 103967 0.66 0.574326
Target:  5'- cGGCggCCGCCaCACggaaGCGCUCGcCGCcGcCGCg -3'
miRNA:   3'- -CCG--GGCGG-GUG----UGCGAGU-GCGcC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 106384 0.66 0.564712
Target:  5'- --gCCGUugCCGC-CGCUgucggcgacaucCGCGCGGCGCu -3'
miRNA:   3'- ccgGGCG--GGUGuGCGA------------GUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 99655 0.66 0.583977
Target:  5'- uGCgCGCCaGCACGCUgaccgucgucagCGCGCugcccgggaugaGGCGCg -3'
miRNA:   3'- cCGgGCGGgUGUGCGA------------GUGCG------------CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 5093 0.66 0.574326
Target:  5'- cGGCCaccauGCgCCACA-GCUC-CGCcagcucGGCGCg -3'
miRNA:   3'- -CCGGg----CG-GGUGUgCGAGuGCG------CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 75460 0.66 0.564712
Target:  5'- gGGCCaGuUCCAgGCGC-CGgGCGGCGg -3'
miRNA:   3'- -CCGGgC-GGGUgUGCGaGUgCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 99460 0.66 0.583977
Target:  5'- cGGgCCGaCCCGCggcgGCGCUgGCcgcuGCGGCcaGCg -3'
miRNA:   3'- -CCgGGC-GGGUG----UGCGAgUG----CGCCG--CG- -5'
23757 3' -63.1 NC_005261.1 + 112938 0.66 0.59269
Target:  5'- cGGCgCGCUCGCcuucgacuucgccGCGCUgucCACGgCGGcCGCc -3'
miRNA:   3'- -CCGgGCGGGUG-------------UGCGA---GUGC-GCC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 84974 0.66 0.574326
Target:  5'- gGGCgCGUCCGCGaug-CGC-CGGCGCa -3'
miRNA:   3'- -CCGgGCGGGUGUgcgaGUGcGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 77659 0.66 0.564712
Target:  5'- cGGCCggCGCCUGCAgGCgcaggGCGCGGaCGg -3'
miRNA:   3'- -CCGG--GCGGGUGUgCGag---UGCGCC-GCg -5'
23757 3' -63.1 NC_005261.1 + 106203 0.66 0.563753
Target:  5'- cGCCguuuaaacaaaagCGCCCGCGgcCGcCUgGCGCGGcCGCc -3'
miRNA:   3'- cCGG-------------GCGGGUGU--GC-GAgUGCGCC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 117699 0.66 0.583977
Target:  5'- aGGCCgGCCCugAgGC-----CGGCGCg -3'
miRNA:   3'- -CCGGgCGGGugUgCGagugcGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 138016 0.66 0.574326
Target:  5'- cGGCCCgcaGCCCgGCGCgGCcCG-GCGGCGg -3'
miRNA:   3'- -CCGGG---CGGG-UGUG-CGaGUgCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 63227 0.66 0.574326
Target:  5'- cGGUCCuugGCCgACAC-CUC-CGCcGGCGUg -3'
miRNA:   3'- -CCGGG---CGGgUGUGcGAGuGCG-CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 79418 0.66 0.564712
Target:  5'- aGGCCCGUguCgGCGaGCUCGgCGCGcGUGUa -3'
miRNA:   3'- -CCGGGCG--GgUGUgCGAGU-GCGC-CGCG- -5'
23757 3' -63.1 NC_005261.1 + 107192 0.66 0.583977
Target:  5'- aGCCCuGCagCCGCGCGa--AgGCGGCGUg -3'
miRNA:   3'- cCGGG-CG--GGUGUGCgagUgCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 129042 0.66 0.583977
Target:  5'- cGGCagaCGCCCACGCuGC-CGCGCccuacGUGUu -3'
miRNA:   3'- -CCGg--GCGGGUGUG-CGaGUGCGc----CGCG- -5'
23757 3' -63.1 NC_005261.1 + 52972 0.66 0.59269
Target:  5'- cGCCggugcggCGCCgGCAgGCggGgGCGGCGCc -3'
miRNA:   3'- cCGG-------GCGGgUGUgCGagUgCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 25802 0.66 0.564712
Target:  5'- uGGa--GCUCAgGCGCcaUCugGUGGCGCc -3'
miRNA:   3'- -CCgggCGGGUgUGCG--AGugCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.