miRNA display CGI

Results 61 - 80 of 872 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23757	3'	-63.1	NC_005261.1	+	125620	0.66	0.590752
	Target:  5'- cGCCCGCCCuuagaaguccagcaGCugGUUgAgGCGGUcccccaGCa -3' miRNA:   3'- cCGGGCGGG--------------UGugCGAgUgCGCCG------CG- -5'
23757	3'	-63.1	NC_005261.1	+	134144	0.66	0.59366
	Target:  5'- uGGgCUGCgCCugGCGC-CACcCGGgGCu -3' miRNA:   3'- -CCgGGCG-GGugUGCGaGUGcGCCgCG- -5'
23757	3'	-63.1	NC_005261.1	+	47746	0.66	0.564712
	Target:  5'- aGCCCGCUgGCGuCGUcCACcccgaGGCGCg -3' miRNA:   3'- cCGGGCGGgUGU-GCGaGUGcg---CCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	63227	0.66	0.574326
	Target:  5'- cGGUCCuugGCCgACAC-CUC-CGCcGGCGUg -3' miRNA:   3'- -CCGGG---CGGgUGUGcGAGuGCG-CCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	29431	0.66	0.573363
	Target:  5'- gGGCCCGCggccguguucgugCCggagaugggGgACGCggggaagcagUACGCGGCGCu -3' miRNA:   3'- -CCGGGCG-------------GG---------UgUGCGa---------GUGCGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	106384	0.66	0.564712
	Target:  5'- --gCCGUugCCGC-CGCUgucggcgacaucCGCGCGGCGCu -3' miRNA:   3'- ccgGGCG--GGUGuGCGA------------GUGCGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	40027	0.66	0.583977
	Target:  5'- gGGCCCGCaguCgAC-CGCgaccaGCGUGGCGa -3' miRNA:   3'- -CCGGGCG---GgUGuGCGag---UGCGCCGCg -5'
23757	3'	-63.1	NC_005261.1	+	89165	0.66	0.583011
	Target:  5'- aGGUcaaCUGCaCCGCGgacaaccuggagcCGCUCGCG-GGCGCc -3' miRNA:   3'- -CCG---GGCG-GGUGU-------------GCGAGUGCgCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	53246	0.66	0.574326
	Target:  5'- aGCUCGCCC-CGCGCgUC-C-CGGuCGCa -3' miRNA:   3'- cCGGGCGGGuGUGCG-AGuGcGCC-GCG- -5'
23757	3'	-63.1	NC_005261.1	+	112938	0.66	0.59269
	Target:  5'- cGGCgCGCUCGCcuucgacuucgccGCGCUgucCACGgCGGcCGCc -3' miRNA:   3'- -CCGgGCGGGUG-------------UGCGA---GUGC-GCC-GCG- -5'
23757	3'	-63.1	NC_005261.1	+	91062	0.66	0.564712
	Target:  5'- --gCCGCuUCAUcaACGCcuaCGCGCGGCGCc -3' miRNA:   3'- ccgGGCG-GGUG--UGCGa--GUGCGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	106203	0.66	0.563753
	Target:  5'- cGCCguuuaaacaaaagCGCCCGCGgcCGcCUgGCGCGGcCGCc -3' miRNA:   3'- cCGG-------------GCGGGUGU--GC-GAgUGCGCC-GCG- -5'
23757	3'	-63.1	NC_005261.1	+	641	0.66	0.574326
	Target:  5'- cGGCggCCGCCa--GCGC-CGCGUccccGGCGCc -3' miRNA:   3'- -CCG--GGCGGgugUGCGaGUGCG----CCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	79029	0.66	0.600453
	Target:  5'- cGCCCggggcGCCCGCGCcCUUggcgucguccuugaGCGCGcGCGUg -3' miRNA:   3'- cCGGG-----CGGGUGUGcGAG--------------UGCGC-CGCG- -5'
23757	3'	-63.1	NC_005261.1	+	52972	0.66	0.59269
	Target:  5'- cGCCggugcggCGCCgGCAgGCggGgGCGGCGCc -3' miRNA:   3'- cCGG-------GCGGgUGUgCGagUgCGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	53736	0.66	0.587847
	Target:  5'- cGCCCGCacgggcgagcacgugCCGgacgUACGC-CGCGCGGCa- -3' miRNA:   3'- cCGGGCG---------------GGU----GUGCGaGUGCGCCGcg -5'
23757	3'	-63.1	NC_005261.1	+	100901	0.66	0.564712
	Target:  5'- cGGCCuCGCCgCGCAcCGC-CGCGa-GCGUc -3' miRNA:   3'- -CCGG-GCGG-GUGU-GCGaGUGCgcCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	117699	0.66	0.583977
	Target:  5'- aGGCCgGCCCugAgGC-----CGGCGCg -3' miRNA:   3'- -CCGGgCGGGugUgCGagugcGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	32722	0.66	0.59366
	Target:  5'- -cCCCGCCCcCGucuccgucCGCUCugcGCGCGGCccGCc -3' miRNA:   3'- ccGGGCGGGuGU--------GCGAG---UGCGCCG--CG- -5'
23757	3'	-63.1	NC_005261.1	+	130137	0.66	0.581078
	Target:  5'- cGCgCCGUCCGCcgaGCGCacCACguccuccaccgucaGCGGCGCc -3' miRNA:   3'- cCG-GGCGGGUG---UGCGa-GUG--------------CGCCGCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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