miRNA display CGI


Results 81 - 100 of 872 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23757 3' -63.1 NC_005261.1 + 61060 0.66 0.564712
Target:  5'- gGGCCUGgagcacuucuuCCUGCcgGCGCUCACG-GGCaGCu -3'
miRNA:   3'- -CCGGGC-----------GGGUG--UGCGAGUGCgCCG-CG- -5'
23757 3' -63.1 NC_005261.1 + 64113 0.66 0.603368
Target:  5'- cGGCaCgGgCgGCACGUgcCGCGCGGcCGCc -3'
miRNA:   3'- -CCG-GgCgGgUGUGCGa-GUGCGCC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 65280 0.66 0.59366
Target:  5'- uGCCgGUCCACGCucaGCUCAaaGCcGCGCc -3'
miRNA:   3'- cCGGgCGGGUGUG---CGAGUg-CGcCGCG- -5'
23757 3' -63.1 NC_005261.1 + 103967 0.66 0.574326
Target:  5'- cGGCggCCGCCaCACggaaGCGCUCGcCGCcGcCGCg -3'
miRNA:   3'- -CCG--GGCGG-GUG----UGCGAGU-GCGcC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 117063 0.66 0.606285
Target:  5'- aGGCCaGCCUgguuaaGCACGagcucggcgaguaCUCgaucaugcucccgacGCGCGGCGCu -3'
miRNA:   3'- -CCGGgCGGG------UGUGC-------------GAG---------------UGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 28286 0.66 0.603368
Target:  5'- cGCCgCGgCCGCGguCGuCUCcuucguuCGCGGCGCc -3'
miRNA:   3'- cCGG-GCgGGUGU--GC-GAGu------GCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 59002 0.66 0.613096
Target:  5'- cGGUgCGCCgG---GCUCGCccaGCGGCGCc -3'
miRNA:   3'- -CCGgGCGGgUgugCGAGUG---CGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 71253 0.66 0.603368
Target:  5'- aGCCgaGCCC-CGCGCcgagcagCACGC-GCGCc -3'
miRNA:   3'- cCGGg-CGGGuGUGCGa------GUGCGcCGCG- -5'
23757 3' -63.1 NC_005261.1 + 40027 0.66 0.583977
Target:  5'- gGGCCCGCaguCgAC-CGCgaccaGCGUGGCGa -3'
miRNA:   3'- -CCGGGCG---GgUGuGCGag---UGCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 89165 0.66 0.583011
Target:  5'- aGGUcaaCUGCaCCGCGgacaaccuggagcCGCUCGCG-GGCGCc -3'
miRNA:   3'- -CCG---GGCG-GGUGU-------------GCGAGUGCgCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 5093 0.66 0.574326
Target:  5'- cGGCCaccauGCgCCACA-GCUC-CGCcagcucGGCGCg -3'
miRNA:   3'- -CCGGg----CG-GGUGUgCGAGuGCG------CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 20006 0.66 0.603368
Target:  5'- cGGCCCcugaCCCGCACcCgUC-CGCGGUcaGCg -3'
miRNA:   3'- -CCGGGc---GGGUGUGcG-AGuGCGCCG--CG- -5'
23757 3' -63.1 NC_005261.1 + 126073 0.66 0.583977
Target:  5'- cGCCCGCCgGCcucgGCGggCGCGCccaucuucGCGCg -3'
miRNA:   3'- cCGGGCGGgUG----UGCgaGUGCGc-------CGCG- -5'
23757 3' -63.1 NC_005261.1 + 32722 0.66 0.59366
Target:  5'- -cCCCGCCCcCGucuccgucCGCUCugcGCGCGGCccGCc -3'
miRNA:   3'- ccGGGCGGGuGU--------GCGAG---UGCGCCG--CG- -5'
23757 3' -63.1 NC_005261.1 + 117699 0.66 0.583977
Target:  5'- aGGCCgGCCCugAgGC-----CGGCGCg -3'
miRNA:   3'- -CCGGgCGGGugUgCGagugcGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 138016 0.66 0.574326
Target:  5'- cGGCCCgcaGCCCgGCGCgGCcCG-GCGGCGg -3'
miRNA:   3'- -CCGGG---CGGG-UGUG-CGaGUgCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 112488 0.66 0.59366
Target:  5'- uGCUCGCCCGCgACGagUCaACGCGcUGCg -3'
miRNA:   3'- cCGGGCGGGUG-UGCg-AG-UGCGCcGCG- -5'
23757 3' -63.1 NC_005261.1 + 14066 0.66 0.564712
Target:  5'- aGGCCgCGUCCAgG-GC-CACGuCGGCGa -3'
miRNA:   3'- -CCGG-GCGGGUgUgCGaGUGC-GCCGCg -5'
23757 3' -63.1 NC_005261.1 + 112938 0.66 0.59269
Target:  5'- cGGCgCGCUCGCcuucgacuucgccGCGCUgucCACGgCGGcCGCc -3'
miRNA:   3'- -CCGgGCGGGUG-------------UGCGA---GUGC-GCC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 68754 0.66 0.583977
Target:  5'- cGCCCGCCgGgGCGC---CGCGGaGCc -3'
miRNA:   3'- cCGGGCGGgUgUGCGaguGCGCCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.