miRNA display CGI


Results 101 - 120 of 872 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23757 3' -63.1 NC_005261.1 + 47746 0.66 0.564712
Target:  5'- aGCCCGCUgGCGuCGUcCACcccgaGGCGCg -3'
miRNA:   3'- cCGGGCGGgUGU-GCGaGUGcg---CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 23315 0.66 0.601425
Target:  5'- uGGCCgagcagaaagaaGCCgACGag--CGCGCGGCGCa -3'
miRNA:   3'- -CCGGg-----------CGGgUGUgcgaGUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 134144 0.66 0.59366
Target:  5'- uGGgCUGCgCCugGCGC-CACcCGGgGCu -3'
miRNA:   3'- -CCgGGCG-GGugUGCGaGUGcGCCgCG- -5'
23757 3' -63.1 NC_005261.1 + 53246 0.66 0.574326
Target:  5'- aGCUCGCCC-CGCGCgUC-C-CGGuCGCa -3'
miRNA:   3'- cCGGGCGGGuGUGCG-AGuGcGCC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 88782 0.66 0.613096
Target:  5'- cGGCCCuGgCCGCcgGCGC-CGCGCagcaGGaCGCc -3'
miRNA:   3'- -CCGGG-CgGGUG--UGCGaGUGCG----CC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 21127 0.66 0.59366
Target:  5'- uGCCCaaGCCCcCACGagCGCGUGGUGa -3'
miRNA:   3'- cCGGG--CGGGuGUGCgaGUGCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 20006 0.66 0.603368
Target:  5'- cGGCCCcugaCCCGCACcCgUC-CGCGGUcaGCg -3'
miRNA:   3'- -CCGGGc---GGGUGUGcG-AGuGCGCCG--CG- -5'
23757 3' -63.1 NC_005261.1 + 98569 0.66 0.59366
Target:  5'- gGGCggCCGUCCuccGCGgGCUCgggcgaguAgGCGGCGCc -3'
miRNA:   3'- -CCG--GGCGGG---UGUgCGAG--------UgCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 89165 0.66 0.583011
Target:  5'- aGGUcaaCUGCaCCGCGgacaaccuggagcCGCUCGCG-GGCGCc -3'
miRNA:   3'- -CCG---GGCG-GGUGU-------------GCGAGUGCgCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 121164 0.66 0.59366
Target:  5'- aGGgUUGCCCGgGCGCUCgguGCaCGGgGCc -3'
miRNA:   3'- -CCgGGCGGGUgUGCGAG---UGcGCCgCG- -5'
23757 3' -63.1 NC_005261.1 + 19075 0.66 0.583977
Target:  5'- cGGCUC-UCgGCGCguGCUUGCGUGGCGUu -3'
miRNA:   3'- -CCGGGcGGgUGUG--CGAGUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 109502 0.67 0.558964
Target:  5'- gGGCCCgcGCCCgccgcgggguuuauuGCGCGCcCGcCGCGG-GCc -3'
miRNA:   3'- -CCGGG--CGGG---------------UGUGCGaGU-GCGCCgCG- -5'
23757 3' -63.1 NC_005261.1 + 104398 0.67 0.508103
Target:  5'- aGGCgCGCCauaaaGCGCGC-CGaaaCGGCGCc -3'
miRNA:   3'- -CCGgGCGGg----UGUGCGaGUgc-GCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 92800 0.67 0.508103
Target:  5'- gGGUCCGgUCGC-CGggCGCGCgGGCGUg -3'
miRNA:   3'- -CCGGGCgGGUGuGCgaGUGCG-CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 12023 0.67 0.508103
Target:  5'- cGCUCGCCCGCgacGCGCUCGagccccaGcCGGaGCa -3'
miRNA:   3'- cCGGGCGGGUG---UGCGAGUg------C-GCCgCG- -5'
23757 3' -63.1 NC_005261.1 + 38182 0.67 0.508103
Target:  5'- uGCCUggagGCCUGgGCGCgC-CGCGGCGUg -3'
miRNA:   3'- cCGGG----CGGGUgUGCGaGuGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 94844 0.67 0.508103
Target:  5'- cGGCgCGCCUgGCcucgGCGCUCGCGCacggcccgGGCGg -3'
miRNA:   3'- -CCGgGCGGG-UG----UGCGAGUGCG--------CCGCg -5'
23757 3' -63.1 NC_005261.1 + 57373 0.67 0.508103
Target:  5'- cGGCCCgacGCCCGCcaGCaGCUCGgG-GaGCGCg -3'
miRNA:   3'- -CCGGG---CGGGUG--UG-CGAGUgCgC-CGCG- -5'
23757 3' -63.1 NC_005261.1 + 37309 0.67 0.508103
Target:  5'- cGCCC-CCCGCACGaggACGCGGUc- -3'
miRNA:   3'- cCGGGcGGGUGUGCgagUGCGCCGcg -5'
23757 3' -63.1 NC_005261.1 + 86370 0.67 0.507179
Target:  5'- cGCCCGCgUCGCAgCGCUCcagguagaagagcACGC-GCGCc -3'
miRNA:   3'- cCGGGCG-GGUGU-GCGAG-------------UGCGcCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.