Results 21 - 40 of 872 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 107756 | 0.8 | 0.088098 |
Target: 5'- gGGCCaCGCCCcaGCGCUCGC-UGGCGCg -3' miRNA: 3'- -CCGG-GCGGGugUGCGAGUGcGCCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 11887 | 0.8 | 0.085896 |
Target: 5'- aGCCCGCCCGCACGCgcgccCGcCGCGG-GCc -3' miRNA: 3'- cCGGGCGGGUGUGCGa----GU-GCGCCgCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 58266 | 0.8 | 0.083747 |
Target: 5'- cGCCgCGCUCGcCGCGCUCACGgggcCGGCGCg -3' miRNA: 3'- cCGG-GCGGGU-GUGCGAGUGC----GCCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 59092 | 0.8 | 0.081649 |
Target: 5'- cGCCgCGCCCuCGCGCUCGCagGCGcGCGCg -3' miRNA: 3'- cCGG-GCGGGuGUGCGAGUG--CGC-CGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 47926 | 0.8 | 0.081649 |
Target: 5'- cGGCCgucaCGuCCCGCGCGCcgCGCGCGaGCGCg -3' miRNA: 3'- -CCGG----GC-GGGUGUGCGa-GUGCGC-CGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 135429 | 0.8 | 0.081649 |
Target: 5'- aGGUgCGCUCGCACGCcgccCAgGCGGCGCg -3' miRNA: 3'- -CCGgGCGGGUGUGCGa---GUgCGCCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 36867 | 0.8 | 0.079399 |
Target: 5'- cGCCCGcCCCGCACGCUggccCGCGCccuuccucgccaaGGCGCg -3' miRNA: 3'- cCGGGC-GGGUGUGCGA----GUGCG-------------CCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 67457 | 0.8 | 0.079399 |
Target: 5'- cGGUCCGCCCGCACGCcCGCguacaggaagcccGCGGcCGCc -3' miRNA: 3'- -CCGGGCGGGUGUGCGaGUG-------------CGCC-GCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 104291 | 0.8 | 0.075652 |
Target: 5'- gGGCCUcgcagGCCCGCGCGCgcucaaagagCGCGCGGaCGCg -3' miRNA: 3'- -CCGGG-----CGGGUGUGCGa---------GUGCGCC-GCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 60203 | 0.79 | 0.102476 |
Target: 5'- aGUCCGCgCGCGCGCUCccgccGCGgGGCGCc -3' miRNA: 3'- cCGGGCGgGUGUGCGAG-----UGCgCCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 99515 | 0.79 | 0.101707 |
Target: 5'- gGGCCCGCCCguuGCgugcaccgucgaggGCGCgucCAgGCGGCGCg -3' miRNA: 3'- -CCGGGCGGG---UG--------------UGCGa--GUgCGCCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 105913 | 0.79 | 0.099935 |
Target: 5'- cGGgCCGCUCGCGCGCgccCACGCcGCGCc -3' miRNA: 3'- -CCgGGCGGGUGUGCGa--GUGCGcCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 86888 | 0.79 | 0.097453 |
Target: 5'- uGGCCgCGCCCugGucCGC--GCGCGGCGCg -3' miRNA: 3'- -CCGG-GCGGGugU--GCGagUGCGCCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 54011 | 0.79 | 0.09672 |
Target: 5'- aGGCgCCGCCgcgagcgcuucgcgCACGCGCUCcguguaccgcGCGCGGUGCg -3' miRNA: 3'- -CCG-GGCGG--------------GUGUGCGAG----------UGCGCCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 39544 | 0.79 | 0.09503 |
Target: 5'- cGGCCgccaGCCC-CGCGCgCGCGCGGCGg -3' miRNA: 3'- -CCGGg---CGGGuGUGCGaGUGCGCCGCg -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 37219 | 0.79 | 0.092664 |
Target: 5'- uGGCU--CCCGCGgGCUUGCGCGGCGCg -3' miRNA: 3'- -CCGGgcGGGUGUgCGAGUGCGCCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 118565 | 0.79 | 0.090354 |
Target: 5'- cGCCgUGCCCGCGCGCgCG-GCGGCGCg -3' miRNA: 3'- cCGG-GCGGGUGUGCGaGUgCGCCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 30358 | 0.79 | 0.090354 |
Target: 5'- cGGCCCugaagGCCgGCGCGCcgggCGcCGCGGCGCg -3' miRNA: 3'- -CCGGG-----CGGgUGUGCGa---GU-GCGCCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 2125 | 0.79 | 0.090354 |
Target: 5'- uGCgCGCCgaGCGCGCUCACGUccGGCGCg -3' miRNA: 3'- cCGgGCGGg-UGUGCGAGUGCG--CCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 126607 | 0.79 | 0.102476 |
Target: 5'- aGGCCCGCgUAC-CGCUCuuccCGCGcGCGCa -3' miRNA: 3'- -CCGGGCGgGUGuGCGAGu---GCGC-CGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home