Results 41 - 60 of 872 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 118565 | 0.79 | 0.090354 |
Target: 5'- cGCCgUGCCCGCGCGCgCG-GCGGCGCg -3' miRNA: 3'- cCGG-GCGGGUGUGCGaGUgCGCCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 37219 | 0.79 | 0.092664 |
Target: 5'- uGGCU--CCCGCGgGCUUGCGCGGCGCg -3' miRNA: 3'- -CCGGgcGGGUGUgCGAGUGCGCCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 39544 | 0.79 | 0.09503 |
Target: 5'- cGGCCgccaGCCC-CGCGCgCGCGCGGCGg -3' miRNA: 3'- -CCGGg---CGGGuGUGCGaGUGCGCCGCg -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 54128 | 0.78 | 0.11326 |
Target: 5'- gGGCUCGUCCcacgGCACGCcgCACGCGGCcguGCg -3' miRNA: 3'- -CCGGGCGGG----UGUGCGa-GUGCGCCG---CG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 36940 | 0.78 | 0.11326 |
Target: 5'- gGGCCCuGCgCugGCGCaaggcccgcCGCGCGGCGCa -3' miRNA: 3'- -CCGGG-CGgGugUGCGa--------GUGCGCCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 33733 | 0.78 | 0.116118 |
Target: 5'- gGGCCUGCCC-----CUCGCGCGGCGCc -3' miRNA: 3'- -CCGGGCGGGugugcGAGUGCGCCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 118037 | 0.78 | 0.116118 |
Target: 5'- gGGCCCGgCCGCgACGCccgcgCugGCGGcCGCg -3' miRNA: 3'- -CCGGGCgGGUG-UGCGa----GugCGCC-GCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 102784 | 0.78 | 0.119042 |
Target: 5'- aGGCCuCGCCCcgGC-CGCgaGCGCGGCGCc -3' miRNA: 3'- -CCGG-GCGGG--UGuGCGagUGCGCCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 29330 | 0.78 | 0.119042 |
Target: 5'- cGCCCGgCCGCguGCGCUUcgGCGGCGCg -3' miRNA: 3'- cCGGGCgGGUG--UGCGAGugCGCCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 32361 | 0.78 | 0.119042 |
Target: 5'- gGGCCCGCgggagaCGCugGUgcagGCGCGGCGCg -3' miRNA: 3'- -CCGGGCGg-----GUGugCGag--UGCGCCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 51651 | 0.78 | 0.11326 |
Target: 5'- gGGCCCGCCUucgGCACGCUa--GUGGcCGCg -3' miRNA: 3'- -CCGGGCGGG---UGUGCGAgugCGCC-GCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 43126 | 0.78 | 0.11326 |
Target: 5'- uGGCgCGCCuaCACACGCgCGCGCGGCcuGCg -3' miRNA: 3'- -CCGgGCGG--GUGUGCGaGUGCGCCG--CG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 30238 | 0.78 | 0.110469 |
Target: 5'- uGGcCCCGCUgGCGCGguaCUCgacGCGCGGCGCg -3' miRNA: 3'- -CC-GGGCGGgUGUGC---GAG---UGCGCCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 31316 | 0.78 | 0.108825 |
Target: 5'- gGGCCCGCggGCGCGCUCGCcgccagcgcgccgcuGCGGCGg -3' miRNA: 3'- -CCGGGCGggUGUGCGAGUG---------------CGCCGCg -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 91724 | 0.78 | 0.107741 |
Target: 5'- cGGCUCGCCgcggcgggcuuCGCgGCGCUCACGCcggcGGCGCa -3' miRNA: 3'- -CCGGGCGG-----------GUG-UGCGAGUGCG----CCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 104196 | 0.78 | 0.107741 |
Target: 5'- gGGCgggacggCGUCCAgGCGCUCgcGCGCGGCGCg -3' miRNA: 3'- -CCGg------GCGGGUgUGCGAG--UGCGCCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 97558 | 0.78 | 0.107472 |
Target: 5'- cGGCCCGUCCGcccggggUugGCUCG-GUGGCGCg -3' miRNA: 3'- -CCGGGCGGGU-------GugCGAGUgCGCCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 1890 | 0.78 | 0.106136 |
Target: 5'- cGGCgCGCgCCAgCGCGCgccgcucaggccagCGCGCGGCGCa -3' miRNA: 3'- -CCGgGCG-GGU-GUGCGa-------------GUGCGCCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 118196 | 0.78 | 0.105078 |
Target: 5'- gGGCCCcgcGCCUGcCGCGCUgCGCGgGGCGCu -3' miRNA: 3'- -CCGGG---CGGGU-GUGCGA-GUGCgCCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 97162 | 0.78 | 0.119042 |
Target: 5'- cGGCCCgGCCgGCugGgUCGCG-GGCGCc -3' miRNA: 3'- -CCGGG-CGGgUGugCgAGUGCgCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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