miRNA display CGI


Results 81 - 100 of 872 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23757 3' -63.1 NC_005261.1 + 56401 0.77 0.125098
Target:  5'- gGGCCCugggcGCCC-UGCGCUU-CGCGGCGCa -3'
miRNA:   3'- -CCGGG-----CGGGuGUGCGAGuGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 57246 0.77 0.125098
Target:  5'- cGGCgauccgcgugCCGCCgCACACGCUCcgcaucGCGCGGCaGCu -3'
miRNA:   3'- -CCG----------GGCGG-GUGUGCGAG------UGCGCCG-CG- -5'
23757 3' -63.1 NC_005261.1 + 93760 0.77 0.125098
Target:  5'- cGGCCCGCgCGCGCGCggcgUCGCaGCaGGUGCc -3'
miRNA:   3'- -CCGGGCGgGUGUGCG----AGUG-CG-CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 106573 0.77 0.128233
Target:  5'- cGCCgGCCCcgggGC-CGC-CGCGCGGCGCu -3'
miRNA:   3'- cCGGgCGGG----UGuGCGaGUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 70618 0.77 0.131439
Target:  5'- gGGCCCcccgGCCCAgCAUGCcaagCGcCGCGGCGCu -3'
miRNA:   3'- -CCGGG----CGGGU-GUGCGa---GU-GCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 56596 0.77 0.131439
Target:  5'- cGGaCCC-CCCGCGCGCcaaGCGCGcGCGCg -3'
miRNA:   3'- -CC-GGGcGGGUGUGCGag-UGCGC-CGCG- -5'
23757 3' -63.1 NC_005261.1 + 124932 0.77 0.131439
Target:  5'- aGGCuCCGCCgCGCGCGCUgUGC-CGGCGCc -3'
miRNA:   3'- -CCG-GGCGG-GUGUGCGA-GUGcGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 116647 0.77 0.131439
Target:  5'- aGGCCCgcgcGCCCGCcgccgaccUGCUC-CGCGGCGCc -3'
miRNA:   3'- -CCGGG----CGGGUGu-------GCGAGuGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 2404 0.77 0.131439
Target:  5'- aGCgCGCCCGCGgGCccCGCGCGGCGg -3'
miRNA:   3'- cCGgGCGGGUGUgCGa-GUGCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 64803 0.76 0.156029
Target:  5'- aGCgCCGUUCACGCGCgcgCGCGCGccGCGCg -3'
miRNA:   3'- cCG-GGCGGGUGUGCGa--GUGCGC--CGCG- -5'
23757 3' -63.1 NC_005261.1 + 14443 0.76 0.156029
Target:  5'- cGGCUCGCUCGCGgGg-CGCGCGGCGg -3'
miRNA:   3'- -CCGGGCGGGUGUgCgaGUGCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 4506 0.76 0.152277
Target:  5'- gGGCCCcagucgcgcGCCCGCGCGggCGcCGCGGCGa -3'
miRNA:   3'- -CCGGG---------CGGGUGUGCgaGU-GCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 130233 0.76 0.152277
Target:  5'- cGGCCCGCUCAgGCGCcgCGCcaGCGGCu- -3'
miRNA:   3'- -CCGGGCGGGUgUGCGa-GUG--CGCCGcg -5'
23757 3' -63.1 NC_005261.1 + 73452 0.76 0.151536
Target:  5'- cGGCCgcguccgCGUCCGCGCGCcCccccugggccgcgGCGCGGCGCg -3'
miRNA:   3'- -CCGG-------GCGGGUGUGCGaG-------------UGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 30061 0.76 0.148606
Target:  5'- cGGCCUGCgCUccagACGCGCUa--GCGGCGCa -3'
miRNA:   3'- -CCGGGCG-GG----UGUGCGAgugCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 76409 0.76 0.148606
Target:  5'- cGGCCgGCCCcgGCGCGUgcagaGCGCcGGCGCc -3'
miRNA:   3'- -CCGGgCGGG--UGUGCGag---UGCG-CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 53019 0.76 0.148606
Target:  5'- aGCUCGCCa--GCGCUUcCGCGGCGCc -3'
miRNA:   3'- cCGGGCGGgugUGCGAGuGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 75992 0.76 0.147521
Target:  5'- cGGCCgcccucgcgcuggaCGCCCugGCGC-CGCGCaGCGCc -3'
miRNA:   3'- -CCGG--------------GCGGGugUGCGaGUGCGcCGCG- -5'
23757 3' -63.1 NC_005261.1 + 1171 0.76 0.146443
Target:  5'- cGCCgGCCCGCGcCGCggCcggggccggggccggGCGCGGCGCg -3'
miRNA:   3'- cCGGgCGGGUGU-GCGa-G---------------UGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 102652 0.76 0.156029
Target:  5'- cGGCCCGCa-GCACcucCUC-CGCGGCGCc -3'
miRNA:   3'- -CCGGGCGggUGUGc--GAGuGCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.