miRNA display CGI


Results 41 - 60 of 872 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23757 3' -63.1 NC_005261.1 + 126607 0.79 0.102476
Target:  5'- aGGCCCGCgUAC-CGCUCuuccCGCGcGCGCa -3'
miRNA:   3'- -CCGGGCGgGUGuGCGAGu---GCGC-CGCG- -5'
23757 3' -63.1 NC_005261.1 + 31791 0.79 0.102476
Target:  5'- uGCCCGCggcgcagugcgCCGCGCGCUgGCcugaGCGGCGCg -3'
miRNA:   3'- cCGGGCG-----------GGUGUGCGAgUG----CGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 39448 0.79 0.102476
Target:  5'- gGGCCCcgaGCCUcCGCGCg-GCGCGGCGCc -3'
miRNA:   3'- -CCGGG---CGGGuGUGCGagUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 47796 0.78 0.105078
Target:  5'- gGGCCCGaUCCGCGCGCgcaGCGCcaccagGGCGCu -3'
miRNA:   3'- -CCGGGC-GGGUGUGCGag-UGCG------CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 118196 0.78 0.105078
Target:  5'- gGGCCCcgcGCCUGcCGCGCUgCGCGgGGCGCu -3'
miRNA:   3'- -CCGGG---CGGGU-GUGCGA-GUGCgCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 1890 0.78 0.106136
Target:  5'- cGGCgCGCgCCAgCGCGCgccgcucaggccagCGCGCGGCGCa -3'
miRNA:   3'- -CCGgGCG-GGU-GUGCGa-------------GUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 97558 0.78 0.107472
Target:  5'- cGGCCCGUCCGcccggggUugGCUCG-GUGGCGCg -3'
miRNA:   3'- -CCGGGCGGGU-------GugCGAGUgCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 104196 0.78 0.107741
Target:  5'- gGGCgggacggCGUCCAgGCGCUCgcGCGCGGCGCg -3'
miRNA:   3'- -CCGg------GCGGGUgUGCGAG--UGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 91724 0.78 0.107741
Target:  5'- cGGCUCGCCgcggcgggcuuCGCgGCGCUCACGCcggcGGCGCa -3'
miRNA:   3'- -CCGGGCGG-----------GUG-UGCGAGUGCG----CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 31316 0.78 0.108825
Target:  5'- gGGCCCGCggGCGCGCUCGCcgccagcgcgccgcuGCGGCGg -3'
miRNA:   3'- -CCGGGCGggUGUGCGAGUG---------------CGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 30238 0.78 0.110469
Target:  5'- uGGcCCCGCUgGCGCGguaCUCgacGCGCGGCGCg -3'
miRNA:   3'- -CC-GGGCGGgUGUGC---GAG---UGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 36940 0.78 0.11326
Target:  5'- gGGCCCuGCgCugGCGCaaggcccgcCGCGCGGCGCa -3'
miRNA:   3'- -CCGGG-CGgGugUGCGa--------GUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 54128 0.78 0.11326
Target:  5'- gGGCUCGUCCcacgGCACGCcgCACGCGGCcguGCg -3'
miRNA:   3'- -CCGGGCGGG----UGUGCGa-GUGCGCCG---CG- -5'
23757 3' -63.1 NC_005261.1 + 51651 0.78 0.11326
Target:  5'- gGGCCCGCCUucgGCACGCUa--GUGGcCGCg -3'
miRNA:   3'- -CCGGGCGGG---UGUGCGAgugCGCC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 43126 0.78 0.11326
Target:  5'- uGGCgCGCCuaCACACGCgCGCGCGGCcuGCg -3'
miRNA:   3'- -CCGgGCGG--GUGUGCGaGUGCGCCG--CG- -5'
23757 3' -63.1 NC_005261.1 + 33733 0.78 0.116118
Target:  5'- gGGCCUGCCC-----CUCGCGCGGCGCc -3'
miRNA:   3'- -CCGGGCGGGugugcGAGUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 118037 0.78 0.116118
Target:  5'- gGGCCCGgCCGCgACGCccgcgCugGCGGcCGCg -3'
miRNA:   3'- -CCGGGCgGGUG-UGCGa----GugCGCC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 29330 0.78 0.119042
Target:  5'- cGCCCGgCCGCguGCGCUUcgGCGGCGCg -3'
miRNA:   3'- cCGGGCgGGUG--UGCGAGugCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 32361 0.78 0.119042
Target:  5'- gGGCCCGCgggagaCGCugGUgcagGCGCGGCGCg -3'
miRNA:   3'- -CCGGGCGg-----GUGugCGag--UGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 97162 0.78 0.119042
Target:  5'- cGGCCCgGCCgGCugGgUCGCG-GGCGCc -3'
miRNA:   3'- -CCGGG-CGGgUGugCgAGUGCgCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.