miRNA display CGI


Results 61 - 80 of 872 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23757 3' -63.1 NC_005261.1 + 29330 0.78 0.119042
Target:  5'- cGCCCGgCCGCguGCGCUUcgGCGGCGCg -3'
miRNA:   3'- cCGGGCgGGUG--UGCGAGugCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 102784 0.78 0.119042
Target:  5'- aGGCCuCGCCCcgGC-CGCgaGCGCGGCGCc -3'
miRNA:   3'- -CCGG-GCGGG--UGuGCGagUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 71781 0.77 0.122036
Target:  5'- cGGCCCGCUCGCA-GCUgaGCGCGGCcCg -3'
miRNA:   3'- -CCGGGCGGGUGUgCGAg-UGCGCCGcG- -5'
23757 3' -63.1 NC_005261.1 + 66002 0.77 0.122036
Target:  5'- aGGUCCGCCUuuacGCGCGC-CAcCGcCGGCGCg -3'
miRNA:   3'- -CCGGGCGGG----UGUGCGaGU-GC-GCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 93760 0.77 0.125098
Target:  5'- cGGCCCGCgCGCGCGCggcgUCGCaGCaGGUGCc -3'
miRNA:   3'- -CCGGGCGgGUGUGCG----AGUG-CG-CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 57246 0.77 0.125098
Target:  5'- cGGCgauccgcgugCCGCCgCACACGCUCcgcaucGCGCGGCaGCu -3'
miRNA:   3'- -CCG----------GGCGG-GUGUGCGAG------UGCGCCG-CG- -5'
23757 3' -63.1 NC_005261.1 + 56401 0.77 0.125098
Target:  5'- gGGCCCugggcGCCC-UGCGCUU-CGCGGCGCa -3'
miRNA:   3'- -CCGGG-----CGGGuGUGCGAGuGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 73350 0.77 0.125098
Target:  5'- -cUCCGCCCgGCGCcgGCUCAgGCGGCGCc -3'
miRNA:   3'- ccGGGCGGG-UGUG--CGAGUgCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 106573 0.77 0.128233
Target:  5'- cGCCgGCCCcgggGC-CGC-CGCGCGGCGCu -3'
miRNA:   3'- cCGGgCGGG----UGuGCGaGUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 134058 0.77 0.131439
Target:  5'- cGGCCCGUaCACgaaGCUCGCGCGGCu- -3'
miRNA:   3'- -CCGGGCGgGUGug-CGAGUGCGCCGcg -5'
23757 3' -63.1 NC_005261.1 + 117941 0.77 0.131439
Target:  5'- cGGCCCGU--GCGCGCUCGCuGCuacgGGCGCg -3'
miRNA:   3'- -CCGGGCGggUGUGCGAGUG-CG----CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 81274 0.77 0.131439
Target:  5'- cGG-CCGCCUGCGCGagccggaGCGCGGCGCg -3'
miRNA:   3'- -CCgGGCGGGUGUGCgag----UGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 70618 0.77 0.131439
Target:  5'- gGGCCCcccgGCCCAgCAUGCcaagCGcCGCGGCGCu -3'
miRNA:   3'- -CCGGG----CGGGU-GUGCGa---GU-GCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 56596 0.77 0.131439
Target:  5'- cGGaCCC-CCCGCGCGCcaaGCGCGcGCGCg -3'
miRNA:   3'- -CC-GGGcGGGUGUGCGag-UGCGC-CGCG- -5'
23757 3' -63.1 NC_005261.1 + 124932 0.77 0.131439
Target:  5'- aGGCuCCGCCgCGCGCGCUgUGC-CGGCGCc -3'
miRNA:   3'- -CCG-GGCGG-GUGUGCGA-GUGcGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 116647 0.77 0.131439
Target:  5'- aGGCCCgcgcGCCCGCcgccgaccUGCUC-CGCGGCGCc -3'
miRNA:   3'- -CCGGG----CGGGUGu-------GCGAGuGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 2404 0.77 0.131439
Target:  5'- aGCgCGCCCGCGgGCccCGCGCGGCGg -3'
miRNA:   3'- cCGgGCGGGUGUgCGa-GUGCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 59130 0.77 0.134719
Target:  5'- cGGCCaccgacucagGCCgGCGCGCcccgggCGCGCGGCGCc -3'
miRNA:   3'- -CCGGg---------CGGgUGUGCGa-----GUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 94885 0.77 0.134719
Target:  5'- cGGCCCGCgugcagCCACACGCgCGCGCuggaGGCGa -3'
miRNA:   3'- -CCGGGCG------GGUGUGCGaGUGCG----CCGCg -5'
23757 3' -63.1 NC_005261.1 + 132367 0.77 0.134719
Target:  5'- cGGCgCGCUCGcCGCGCU--CGCGGCGCu -3'
miRNA:   3'- -CCGgGCGGGU-GUGCGAguGCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.