miRNA display CGI


Results 81 - 100 of 872 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23757 3' -63.1 NC_005261.1 + 59984 0.77 0.134719
Target:  5'- aGGCgCCGUCCGCACcCUCGgGCaGCGCg -3'
miRNA:   3'- -CCG-GGCGGGUGUGcGAGUgCGcCGCG- -5'
23757 3' -63.1 NC_005261.1 + 110850 0.77 0.138075
Target:  5'- uGCCCGCCCugGCGaacagcCGCGCGGCc- -3'
miRNA:   3'- cCGGGCGGGugUGCga----GUGCGCCGcg -5'
23757 3' -63.1 NC_005261.1 + 128816 0.77 0.138075
Target:  5'- gGGCUCGCgCUGCggcugACGCUCGCGCGGCu- -3'
miRNA:   3'- -CCGGGCG-GGUG-----UGCGAGUGCGCCGcg -5'
23757 3' -63.1 NC_005261.1 + 29175 0.77 0.138075
Target:  5'- aGGCCaggGCCCgGCGCcCUCGcCGCGGCGCc -3'
miRNA:   3'- -CCGGg--CGGG-UGUGcGAGU-GCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 44239 0.77 0.138075
Target:  5'- uGG-CCGCCCAgCGCGCggccgaCGcCGCGGCGCg -3'
miRNA:   3'- -CCgGGCGGGU-GUGCGa-----GU-GCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 95876 0.77 0.138075
Target:  5'- cGCCuuguuugggCGCCCucuuaacgcGCGCGCcCGCGCGGCGCg -3'
miRNA:   3'- cCGG---------GCGGG---------UGUGCGaGUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 54214 0.77 0.141507
Target:  5'- uGCCgaugaccaGCCCGCAgG-UCACGCGGCGCg -3'
miRNA:   3'- cCGGg-------CGGGUGUgCgAGUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 37184 0.77 0.141507
Target:  5'- gGGCgCUGCUgGCgGCGCUgCugGCGGCGCu -3'
miRNA:   3'- -CCG-GGCGGgUG-UGCGA-GugCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 122716 0.77 0.141507
Target:  5'- cGGCCgCGCCguCgAUGUUCACGuCGGCGCc -3'
miRNA:   3'- -CCGG-GCGGguG-UGCGAGUGC-GCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 86076 0.76 0.145017
Target:  5'- uGGCCUGCaugaugcuCCGCGCGUUCuCGuCGGCGCc -3'
miRNA:   3'- -CCGGGCG--------GGUGUGCGAGuGC-GCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 1171 0.76 0.146443
Target:  5'- cGCCgGCCCGCGcCGCggCcggggccggggccggGCGCGGCGCg -3'
miRNA:   3'- cCGGgCGGGUGU-GCGa-G---------------UGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 75992 0.76 0.147521
Target:  5'- cGGCCgcccucgcgcuggaCGCCCugGCGC-CGCGCaGCGCc -3'
miRNA:   3'- -CCGG--------------GCGGGugUGCGaGUGCGcCGCG- -5'
23757 3' -63.1 NC_005261.1 + 30061 0.76 0.148606
Target:  5'- cGGCCUGCgCUccagACGCGCUa--GCGGCGCa -3'
miRNA:   3'- -CCGGGCG-GG----UGUGCGAgugCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 76409 0.76 0.148606
Target:  5'- cGGCCgGCCCcgGCGCGUgcagaGCGCcGGCGCc -3'
miRNA:   3'- -CCGGgCGGG--UGUGCGag---UGCG-CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 53019 0.76 0.148606
Target:  5'- aGCUCGCCa--GCGCUUcCGCGGCGCc -3'
miRNA:   3'- cCGGGCGGgugUGCGAGuGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 73452 0.76 0.151536
Target:  5'- cGGCCgcguccgCGUCCGCGCGCcCccccugggccgcgGCGCGGCGCg -3'
miRNA:   3'- -CCGG-------GCGGGUGUGCGaG-------------UGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 130233 0.76 0.152277
Target:  5'- cGGCCCGCUCAgGCGCcgCGCcaGCGGCu- -3'
miRNA:   3'- -CCGGGCGGGUgUGCGa-GUG--CGCCGcg -5'
23757 3' -63.1 NC_005261.1 + 4506 0.76 0.152277
Target:  5'- gGGCCCcagucgcgcGCCCGCGCGggCGcCGCGGCGa -3'
miRNA:   3'- -CCGGG---------CGGGUGUGCgaGU-GCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 64803 0.76 0.156029
Target:  5'- aGCgCCGUUCACGCGCgcgCGCGCGccGCGCg -3'
miRNA:   3'- cCG-GGCGGGUGUGCGa--GUGCGC--CGCG- -5'
23757 3' -63.1 NC_005261.1 + 102652 0.76 0.156029
Target:  5'- cGGCCCGCa-GCACcucCUC-CGCGGCGCc -3'
miRNA:   3'- -CCGGGCGggUGUGc--GAGuGCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.