miRNA display CGI


Results 101 - 120 of 872 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23757 3' -63.1 NC_005261.1 + 102652 0.76 0.156029
Target:  5'- cGGCCCGCa-GCACcucCUC-CGCGGCGCc -3'
miRNA:   3'- -CCGGGCGggUGUGc--GAGuGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 64803 0.76 0.156029
Target:  5'- aGCgCCGUUCACGCGCgcgCGCGCGccGCGCg -3'
miRNA:   3'- cCG-GGCGGGUGUGCGa--GUGCGC--CGCG- -5'
23757 3' -63.1 NC_005261.1 + 14443 0.76 0.156029
Target:  5'- cGGCUCGCUCGCGgGg-CGCGCGGCGg -3'
miRNA:   3'- -CCGGGCGGGUGUgCgaGUGCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 4454 0.76 0.159477
Target:  5'- gGGCCCuccagcggcggcgGCCCGuCGCGCggCGcCGCGGCGUa -3'
miRNA:   3'- -CCGGG-------------CGGGU-GUGCGa-GU-GCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 117723 0.76 0.159864
Target:  5'- gGGCCCGCaagcggCCGCGCGCUgGCGCcGcCGCc -3'
miRNA:   3'- -CCGGGCG------GGUGUGCGAgUGCGcC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 135014 0.76 0.159864
Target:  5'- cGGCggGCCCGCACGCggcCGCGGCGg -3'
miRNA:   3'- -CCGggCGGGUGUGCGaguGCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 132211 0.76 0.159864
Target:  5'- gGGCCCGCCC--GCGC-CACGCGaGCa- -3'
miRNA:   3'- -CCGGGCGGGugUGCGaGUGCGC-CGcg -5'
23757 3' -63.1 NC_005261.1 + 84662 0.76 0.159864
Target:  5'- uGGCgCCGCCCGCGCccGCggcCGCGCacacgaagccGGCGCg -3'
miRNA:   3'- -CCG-GGCGGGUGUG--CGa--GUGCG----------CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 103843 0.76 0.163785
Target:  5'- aGCUCGCCCuuGCGCGCgagC-CGCGGCGg -3'
miRNA:   3'- cCGGGCGGG--UGUGCGa--GuGCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 43706 0.76 0.163785
Target:  5'- uGGCCUG-CCACGCGCUgcgcgagcaCGCGCGGCu- -3'
miRNA:   3'- -CCGGGCgGGUGUGCGA---------GUGCGCCGcg -5'
23757 3' -63.1 NC_005261.1 + 53849 0.76 0.163785
Target:  5'- aGCCCuUCCGgcaaGCGCUCcaGCGCGGCGCg -3'
miRNA:   3'- cCGGGcGGGUg---UGCGAG--UGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 118618 0.76 0.163785
Target:  5'- cGGCCguUGCCCugGcCGC-CGCgGCGGCGCu -3'
miRNA:   3'- -CCGG--GCGGGugU-GCGaGUG-CGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 21846 0.75 0.166178
Target:  5'- gGGCUCGCCCcgcagcugacgcuCGCGCUCGCGaacGCGCg -3'
miRNA:   3'- -CCGGGCGGGu------------GUGCGAGUGCgc-CGCG- -5'
23757 3' -63.1 NC_005261.1 + 113318 0.75 0.167791
Target:  5'- gGGCCCGgCUGCGCGagaaggUCGCGCGGCa- -3'
miRNA:   3'- -CCGGGCgGGUGUGCg-----AGUGCGCCGcg -5'
23757 3' -63.1 NC_005261.1 + 59407 0.75 0.167791
Target:  5'- gGGCUCGCCgGCgccgGCGCugUCGCGCGGCccgGCa -3'
miRNA:   3'- -CCGGGCGGgUG----UGCG--AGUGCGCCG---CG- -5'
23757 3' -63.1 NC_005261.1 + 33879 0.75 0.167791
Target:  5'- cGCCCGCCUccgGCGCG-UCAcCGgGGCGCg -3'
miRNA:   3'- cCGGGCGGG---UGUGCgAGU-GCgCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 5132 0.75 0.167791
Target:  5'- cGGCCCGCCg--GCGCUCGCGCgccucggcccGGCGg -3'
miRNA:   3'- -CCGGGCGGgugUGCGAGUGCG----------CCGCg -5'
23757 3' -63.1 NC_005261.1 + 49094 0.75 0.170648
Target:  5'- gGGCCCGCUgaGCGCGCgcagcagcuccucgaGCGCGGCGg -3'
miRNA:   3'- -CCGGGCGGg-UGUGCGag-------------UGCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 52661 0.75 0.170648
Target:  5'- cGGcCCCGCgCGCACuucgagcgggcccuGCUCGCG-GGCGCg -3'
miRNA:   3'- -CC-GGGCGgGUGUG--------------CGAGUGCgCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 18669 0.75 0.170648
Target:  5'- gGGCCCcagcgggcgaagggGCCC-CAgGCUguUGCGGCGCa -3'
miRNA:   3'- -CCGGG--------------CGGGuGUgCGAguGCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.