miRNA display CGI


Results 121 - 140 of 872 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23757 3' -63.1 NC_005261.1 + 102909 0.75 0.171472
Target:  5'- uGGCCCGCagcgccuCCGC-CGCuUCGCGCaGCGCc -3'
miRNA:   3'- -CCGGGCG-------GGUGuGCG-AGUGCGcCGCG- -5'
23757 3' -63.1 NC_005261.1 + 3316 0.75 0.171472
Target:  5'- cGGCCCGCauguccuccaccuCCACcCGCgC-CGCGGCGCc -3'
miRNA:   3'- -CCGGGCG-------------GGUGuGCGaGuGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 115200 0.75 0.171886
Target:  5'- cGGCCCagcGCCCGUGCG-UC-CGCGGCGCg -3'
miRNA:   3'- -CCGGG---CGGGUGUGCgAGuGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 104443 0.75 0.171886
Target:  5'- gGGCCCGCgUCGC-CGC-CGCcgGCGGCGCc -3'
miRNA:   3'- -CCGGGCG-GGUGuGCGaGUG--CGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 81472 0.75 0.171886
Target:  5'- gGGCCCacgccGCCCAgagcagggcCGCgGCUaGCGCGGCGCg -3'
miRNA:   3'- -CCGGG-----CGGGU---------GUG-CGAgUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 76778 0.75 0.171886
Target:  5'- cGGCgcggaCGCCCcCGCGCUgGCGCcGCGCg -3'
miRNA:   3'- -CCGg----GCGGGuGUGCGAgUGCGcCGCG- -5'
23757 3' -63.1 NC_005261.1 + 30963 0.75 0.171886
Target:  5'- aGGCCCGCCgCgACG-GCcCGcCGCGGCGCa -3'
miRNA:   3'- -CCGGGCGG-G-UGUgCGaGU-GCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 9971 0.75 0.171886
Target:  5'- aGCCCGCCCccccggACGCGcCUCgGCGCGGC-Ca -3'
miRNA:   3'- cCGGGCGGG------UGUGC-GAG-UGCGCCGcG- -5'
23757 3' -63.1 NC_005261.1 + 103425 0.75 0.171886
Target:  5'- gGGCCgCGgCCACGCGCgCGCGCGccuCGCg -3'
miRNA:   3'- -CCGG-GCgGGUGUGCGaGUGCGCc--GCG- -5'
23757 3' -63.1 NC_005261.1 + 84907 0.75 0.171886
Target:  5'- uGCCCGCCCACAC-CUC-CG-GGCGg -3'
miRNA:   3'- cCGGGCGGGUGUGcGAGuGCgCCGCg -5'
23757 3' -63.1 NC_005261.1 + 42573 0.75 0.173548
Target:  5'- aGCCCGCgUuccccgugauaagguACGCggcaaaaggcaGCUCGCGCGGCGCa -3'
miRNA:   3'- cCGGGCGgG---------------UGUG-----------CGAGUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 20127 0.75 0.175647
Target:  5'- gGGCCCGCagcggcuCCGCgaGCGCUCAgGCcGCGCc -3'
miRNA:   3'- -CCGGGCG-------GGUG--UGCGAGUgCGcCGCG- -5'
23757 3' -63.1 NC_005261.1 + 131590 0.75 0.175647
Target:  5'- cGGCCgagGCCUACGCGCgCGCGCGcacguacGCGCg -3'
miRNA:   3'- -CCGGg--CGGGUGUGCGaGUGCGC-------CGCG- -5'
23757 3' -63.1 NC_005261.1 + 105529 0.75 0.176069
Target:  5'- cGCCCGCCCaccgggacucggGCugGCcgCACGC-GCGCa -3'
miRNA:   3'- cCGGGCGGG------------UGugCGa-GUGCGcCGCG- -5'
23757 3' -63.1 NC_005261.1 + 72745 0.75 0.176069
Target:  5'- cGGCCCGCauggcgggCCGCAUGCccagCACGgCGGcCGCg -3'
miRNA:   3'- -CCGGGCG--------GGUGUGCGa---GUGC-GCC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 67077 0.75 0.176069
Target:  5'- gGGCUCGCUCGgGCGgUCcauggcgcgACGCGGUGCg -3'
miRNA:   3'- -CCGGGCGGGUgUGCgAG---------UGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 28598 0.75 0.176069
Target:  5'- cGGgCCGCCCGCGCcgaGCUgGCggagcuGUGGCGCa -3'
miRNA:   3'- -CCgGGCGGGUGUG---CGAgUG------CGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 71847 0.75 0.176069
Target:  5'- aGUCCGCCaCugGCGCUCGCGCcGCuuGCg -3'
miRNA:   3'- cCGGGCGG-GugUGCGAGUGCGcCG--CG- -5'
23757 3' -63.1 NC_005261.1 + 131802 0.75 0.176492
Target:  5'- cGCCCGCCgCGCcugacggcgcgccgcCGCUUgACGCGGCGCc -3'
miRNA:   3'- cCGGGCGG-GUGu--------------GCGAG-UGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 50857 0.75 0.180343
Target:  5'- uGGCUCGCCCAgGucggcgccuuCGC-CGCGCuGGCGCu -3'
miRNA:   3'- -CCGGGCGGGUgU----------GCGaGUGCG-CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.