Results 21 - 40 of 872 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 118773 | 0.66 | 0.603368 |
Target: 5'- cGCgCGCCgACGCuGCagacggCGCGCugauGGCGCa -3' miRNA: 3'- cCGgGCGGgUGUG-CGa-----GUGCG----CCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 28286 | 0.66 | 0.603368 |
Target: 5'- cGCCgCGgCCGCGguCGuCUCcuucguuCGCGGCGCc -3' miRNA: 3'- cCGG-GCgGGUGU--GC-GAGu------GCGCCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 126695 | 0.66 | 0.603368 |
Target: 5'- aGGCCgGCggugcgggaagCgGCugGUUCGCGUGcGCGUu -3' miRNA: 3'- -CCGGgCG-----------GgUGugCGAGUGCGC-CGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 134099 | 0.66 | 0.603368 |
Target: 5'- cGGCgCGCCggCGCGCGCUCGC-CGcCGa -3' miRNA: 3'- -CCGgGCGG--GUGUGCGAGUGcGCcGCg -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 64113 | 0.66 | 0.603368 |
Target: 5'- cGGCaCgGgCgGCACGUgcCGCGCGGcCGCc -3' miRNA: 3'- -CCG-GgCgGgUGUGCGa-GUGCGCC-GCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 93866 | 0.66 | 0.603368 |
Target: 5'- aGGCgCGCgCACuccuuccaGCUCagcaGCGCGGuCGCc -3' miRNA: 3'- -CCGgGCGgGUGug------CGAG----UGCGCC-GCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 47455 | 0.66 | 0.603368 |
Target: 5'- cGCCCGgCC---CGCUUGCGCGGgGg -3' miRNA: 3'- cCGGGCgGGuguGCGAGUGCGCCgCg -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 121821 | 0.66 | 0.603368 |
Target: 5'- gGGCuCUGCggGC-CGC-CGCgGCGGCGCa -3' miRNA: 3'- -CCG-GGCGggUGuGCGaGUG-CGCCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 35813 | 0.66 | 0.603368 |
Target: 5'- cGGCCUggaccccgGCCC-CGagaGCUCggcgcagaaaAgGCGGCGCa -3' miRNA: 3'- -CCGGG--------CGGGuGUg--CGAG----------UgCGCCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 117297 | 0.66 | 0.603368 |
Target: 5'- aGCCCGCCCuCGaGCcCAgcCcCGGCGCg -3' miRNA: 3'- cCGGGCGGGuGUgCGaGU--GcGCCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 75372 | 0.66 | 0.603368 |
Target: 5'- cGGCguaccuggaCGCCCugGCGC--GCGCcaucgacgagGGCGCg -3' miRNA: 3'- -CCGg--------GCGGGugUGCGagUGCG----------CCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 23315 | 0.66 | 0.601425 |
Target: 5'- uGGCCgagcagaaagaaGCCgACGag--CGCGCGGCGCa -3' miRNA: 3'- -CCGGg-----------CGGgUGUgcgaGUGCGCCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 79029 | 0.66 | 0.600453 |
Target: 5'- cGCCCggggcGCCCGCGCcCUUggcgucguccuugaGCGCGcGCGUg -3' miRNA: 3'- cCGGG-----CGGGUGUGcGAG--------------UGCGC-CGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 95141 | 0.66 | 0.600453 |
Target: 5'- cGUCCGCCUGCugG-UCGCcgggaaccugcaguGCGGCGa -3' miRNA: 3'- cCGGGCGGGUGugCgAGUG--------------CGCCGCg -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 44011 | 0.66 | 0.59754 |
Target: 5'- aGCCCGgCUucggcgcggcgggcgGC-CGC-CGCGCGGCGg -3' miRNA: 3'- cCGGGCgGG---------------UGuGCGaGUGCGCCGCg -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 2994 | 0.66 | 0.59366 |
Target: 5'- cGGCCUggcgGCCCgGCGCcgggGCUCcCGCGG-GCc -3' miRNA: 3'- -CCGGG----CGGG-UGUG----CGAGuGCGCCgCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 98569 | 0.66 | 0.59366 |
Target: 5'- gGGCggCCGUCCuccGCGgGCUCgggcgaguAgGCGGCGCc -3' miRNA: 3'- -CCG--GGCGGG---UGUgCGAG--------UgCGCCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 88483 | 0.66 | 0.59366 |
Target: 5'- uGCCgCGCCggaGCGCGC-CGCGCucgacccGCGCu -3' miRNA: 3'- cCGG-GCGGg--UGUGCGaGUGCGc------CGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 59485 | 0.66 | 0.59366 |
Target: 5'- cGGCgCGgCCGcCGCGC-CA-GCGGCGg -3' miRNA: 3'- -CCGgGCgGGU-GUGCGaGUgCGCCGCg -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 110411 | 0.66 | 0.59366 |
Target: 5'- cGCCUGCCUGCAggccaugaucCGCUgcCACGCGuuccCGCa -3' miRNA: 3'- cCGGGCGGGUGU----------GCGA--GUGCGCc---GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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