miRNA display CGI


Results 61 - 80 of 872 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23757 3' -63.1 NC_005261.1 + 99655 0.66 0.583977
Target:  5'- uGCgCGCCaGCACGCUgaccgucgucagCGCGCugcccgggaugaGGCGCg -3'
miRNA:   3'- cCGgGCGGgUGUGCGA------------GUGCG------------CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 68754 0.66 0.583977
Target:  5'- cGCCCGCCgGgGCGC---CGCGGaGCc -3'
miRNA:   3'- cCGGGCGGgUgUGCGaguGCGCCgCG- -5'
23757 3' -63.1 NC_005261.1 + 72485 0.66 0.583977
Target:  5'- cGGCCaGCgCCAggaGCGC-CGCGCgaagcgGGCGCc -3'
miRNA:   3'- -CCGGgCG-GGUg--UGCGaGUGCG------CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 41661 0.66 0.583977
Target:  5'- aGG-CgGCUCAUguagGCGCUCAccuCGCGGUGUg -3'
miRNA:   3'- -CCgGgCGGGUG----UGCGAGU---GCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 69408 0.66 0.583977
Target:  5'- uGGCCUcCCgACACa--CGCGcCGGCGCa -3'
miRNA:   3'- -CCGGGcGGgUGUGcgaGUGC-GCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 115454 0.66 0.583977
Target:  5'- cGGCcggacuccuCCGCCUcggugucggucGCGgGCUCggccGCgGCGGCGCg -3'
miRNA:   3'- -CCG---------GGCGGG-----------UGUgCGAG----UG-CGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 99460 0.66 0.583977
Target:  5'- cGGgCCGaCCCGCggcgGCGCUgGCcgcuGCGGCcaGCg -3'
miRNA:   3'- -CCgGGC-GGGUG----UGCGAgUG----CGCCG--CG- -5'
23757 3' -63.1 NC_005261.1 + 107192 0.66 0.583977
Target:  5'- aGCCCuGCagCCGCGCGa--AgGCGGCGUg -3'
miRNA:   3'- cCGGG-CG--GGUGUGCgagUgCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 19075 0.66 0.583977
Target:  5'- cGGCUC-UCgGCGCguGCUUGCGUGGCGUu -3'
miRNA:   3'- -CCGGGcGGgUGUG--CGAGUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 126073 0.66 0.583977
Target:  5'- cGCCCGCCgGCcucgGCGggCGCGCccaucuucGCGCg -3'
miRNA:   3'- cCGGGCGGgUG----UGCgaGUGCGc-------CGCG- -5'
23757 3' -63.1 NC_005261.1 + 117699 0.66 0.583977
Target:  5'- aGGCCgGCCCugAgGC-----CGGCGCg -3'
miRNA:   3'- -CCGGgCGGGugUgCGagugcGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 51408 0.66 0.583011
Target:  5'- cGGa--GCCCGCGCGCcCAcCGCcugcugggccccgGGCGCg -3'
miRNA:   3'- -CCgggCGGGUGUGCGaGU-GCG-------------CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 89165 0.66 0.583011
Target:  5'- aGGUcaaCUGCaCCGCGgacaaccuggagcCGCUCGCG-GGCGCc -3'
miRNA:   3'- -CCG---GGCG-GGUGU-------------GCGAGUGCgCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 130137 0.66 0.581078
Target:  5'- cGCgCCGUCCGCcgaGCGCacCACguccuccaccgucaGCGGCGCc -3'
miRNA:   3'- cCG-GGCGGGUG---UGCGa-GUG--------------CGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 135507 0.66 0.574326
Target:  5'- uGGCCUcaGCCgACGagUGcCUgACGUGGUGCa -3'
miRNA:   3'- -CCGGG--CGGgUGU--GC-GAgUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 91501 0.66 0.574326
Target:  5'- cGCCCGcCCCGCGCGCcugCugGUcucggacauGGC-Cg -3'
miRNA:   3'- cCGGGC-GGGUGUGCGa--GugCG---------CCGcG- -5'
23757 3' -63.1 NC_005261.1 + 77337 0.66 0.574326
Target:  5'- cGGCgCCGCCCcC-CGCcaugaGCGCaGUGCa -3'
miRNA:   3'- -CCG-GGCGGGuGuGCGag---UGCGcCGCG- -5'
23757 3' -63.1 NC_005261.1 + 70231 0.66 0.574326
Target:  5'- uGGCgCCGCgCGCAaaCUCGaccuCGGCGCg -3'
miRNA:   3'- -CCG-GGCGgGUGUgcGAGUgc--GCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 72665 0.66 0.574326
Target:  5'- gGGCCCcCCCGgcgucaucuccCGCGCgaAC-CGGCGCg -3'
miRNA:   3'- -CCGGGcGGGU-----------GUGCGagUGcGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 138016 0.66 0.574326
Target:  5'- cGGCCCgcaGCCCgGCGCgGCcCG-GCGGCGg -3'
miRNA:   3'- -CCGGG---CGGG-UGUG-CGaGUgCGCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.