miRNA display CGI


Results 81 - 100 of 872 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23757 3' -63.1 NC_005261.1 + 48016 0.66 0.574326
Target:  5'- cGcCCCGCCgGCagagcaggGCGaggagCACGCGcGCGCg -3'
miRNA:   3'- cC-GGGCGGgUG--------UGCga---GUGCGC-CGCG- -5'
23757 3' -63.1 NC_005261.1 + 5093 0.66 0.574326
Target:  5'- cGGCCaccauGCgCCACA-GCUC-CGCcagcucGGCGCg -3'
miRNA:   3'- -CCGGg----CG-GGUGUgCGAGuGCG------CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 101011 0.66 0.574326
Target:  5'- cGCgCGUCCAgCGCGCcugugaACGCGGCcgGCa -3'
miRNA:   3'- cCGgGCGGGU-GUGCGag----UGCGCCG--CG- -5'
23757 3' -63.1 NC_005261.1 + 35922 0.66 0.574326
Target:  5'- cGGcCCCGCgCCGCA-GCccaGCG-GGCGCc -3'
miRNA:   3'- -CC-GGGCG-GGUGUgCGag-UGCgCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 641 0.66 0.574326
Target:  5'- cGGCggCCGCCa--GCGC-CGCGUccccGGCGCc -3'
miRNA:   3'- -CCG--GGCGGgugUGCGaGUGCG----CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 70231 0.66 0.574326
Target:  5'- uGGCgCCGCgCGCAaaCUCGaccuCGGCGCg -3'
miRNA:   3'- -CCG-GGCGgGUGUgcGAGUgc--GCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 72665 0.66 0.574326
Target:  5'- gGGCCCcCCCGgcgucaucuccCGCGCgaAC-CGGCGCg -3'
miRNA:   3'- -CCGGGcGGGU-----------GUGCGagUGcGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 67496 0.66 0.574326
Target:  5'- --nCCGCCagcCGCGCGUaguaggccagcgUCGcCGCGGCGCc -3'
miRNA:   3'- ccgGGCGG---GUGUGCG------------AGU-GCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 91501 0.66 0.574326
Target:  5'- cGCCCGcCCCGCGCGCcugCugGUcucggacauGGC-Cg -3'
miRNA:   3'- cCGGGC-GGGUGUGCGa--GugCG---------CCGcG- -5'
23757 3' -63.1 NC_005261.1 + 103967 0.66 0.574326
Target:  5'- cGGCggCCGCCaCACggaaGCGCUCGcCGCcGcCGCg -3'
miRNA:   3'- -CCG--GGCGG-GUG----UGCGAGU-GCGcC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 345 0.66 0.574326
Target:  5'- cGGCCCgcaGCCCgGCGCgGCcCG-GCGGCGg -3'
miRNA:   3'- -CCGGG---CGGG-UGUG-CGaGUgCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 84974 0.66 0.574326
Target:  5'- gGGCgCGUCCGCGaug-CGC-CGGCGCa -3'
miRNA:   3'- -CCGgGCGGGUGUgcgaGUGcGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 29431 0.66 0.573363
Target:  5'- gGGCCCGCggccguguucgugCCggagaugggGgACGCggggaagcagUACGCGGCGCu -3'
miRNA:   3'- -CCGGGCG-------------GG---------UgUGCGa---------GUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 48617 0.66 0.564712
Target:  5'- cGGCCgCGCCCAgcccCACGCcC-CGCcccuGCGCn -3'
miRNA:   3'- -CCGG-GCGGGU----GUGCGaGuGCGc---CGCG- -5'
23757 3' -63.1 NC_005261.1 + 61060 0.66 0.564712
Target:  5'- gGGCCUGgagcacuucuuCCUGCcgGCGCUCACG-GGCaGCu -3'
miRNA:   3'- -CCGGGC-----------GGGUG--UGCGAGUGCgCCG-CG- -5'
23757 3' -63.1 NC_005261.1 + 47746 0.66 0.564712
Target:  5'- aGCCCGCUgGCGuCGUcCACcccgaGGCGCg -3'
miRNA:   3'- cCGGGCGGgUGU-GCGaGUGcg---CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 77659 0.66 0.564712
Target:  5'- cGGCCggCGCCUGCAgGCgcaggGCGCGGaCGg -3'
miRNA:   3'- -CCGG--GCGGGUGUgCGag---UGCGCC-GCg -5'
23757 3' -63.1 NC_005261.1 + 75460 0.66 0.564712
Target:  5'- gGGCCaGuUCCAgGCGC-CGgGCGGCGg -3'
miRNA:   3'- -CCGGgC-GGGUgUGCGaGUgCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 16281 0.66 0.564712
Target:  5'- cGGCUCGCCCGgggggGCGCcgUCGggcccaGCGGCGg -3'
miRNA:   3'- -CCGGGCGGGUg----UGCG--AGUg-----CGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 91062 0.66 0.564712
Target:  5'- --gCCGCuUCAUcaACGCcuaCGCGCGGCGCc -3'
miRNA:   3'- ccgGGCG-GGUG--UGCGa--GUGCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.