Results 101 - 120 of 872 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 14066 | 0.66 | 0.564712 |
Target: 5'- aGGCCgCGUCCAgG-GC-CACGuCGGCGa -3' miRNA: 3'- -CCGG-GCGGGUgUgCGaGUGC-GCCGCg -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 16281 | 0.66 | 0.564712 |
Target: 5'- cGGCUCGCCCGgggggGCGCcgUCGggcccaGCGGCGg -3' miRNA: 3'- -CCGGGCGGGUg----UGCG--AGUg-----CGCCGCg -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 91062 | 0.66 | 0.564712 |
Target: 5'- --gCCGCuUCAUcaACGCcuaCGCGCGGCGCc -3' miRNA: 3'- ccgGGCG-GGUG--UGCGa--GUGCGCCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 108212 | 0.66 | 0.564712 |
Target: 5'- cGCCaGCaCgGCGCGCUCcaGCaUGGCGCa -3' miRNA: 3'- cCGGgCG-GgUGUGCGAG--UGcGCCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 75460 | 0.66 | 0.564712 |
Target: 5'- gGGCCaGuUCCAgGCGC-CGgGCGGCGg -3' miRNA: 3'- -CCGGgC-GGGUgUGCGaGUgCGCCGCg -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 47107 | 0.66 | 0.564712 |
Target: 5'- aGCCCGUCCgugaggacguGCGCGUccaggucgUCGCGCacaGCGCc -3' miRNA: 3'- cCGGGCGGG----------UGUGCG--------AGUGCGc--CGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 106384 | 0.66 | 0.564712 |
Target: 5'- --gCCGUugCCGC-CGCUgucggcgacaucCGCGCGGCGCu -3' miRNA: 3'- ccgGGCG--GGUGuGCGA------------GUGCGCCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 100901 | 0.66 | 0.564712 |
Target: 5'- cGGCCuCGCCgCGCAcCGC-CGCGa-GCGUc -3' miRNA: 3'- -CCGG-GCGG-GUGU-GCGaGUGCgcCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 92752 | 0.66 | 0.564712 |
Target: 5'- aGCgCCGCCCGCGcCGCUCggAC-CGG-GCc -3' miRNA: 3'- cCG-GGCGGGUGU-GCGAG--UGcGCCgCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 61060 | 0.66 | 0.564712 |
Target: 5'- gGGCCUGgagcacuucuuCCUGCcgGCGCUCACG-GGCaGCu -3' miRNA: 3'- -CCGGGC-----------GGGUG--UGCGAGUGCgCCG-CG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 106203 | 0.66 | 0.563753 |
Target: 5'- cGCCguuuaaacaaaagCGCCCGCGgcCGcCUgGCGCGGcCGCc -3' miRNA: 3'- cCGG-------------GCGGGUGU--GC-GAgUGCGCC-GCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 70291 | 0.67 | 0.558964 |
Target: 5'- cGGCCCccgagggcagauaCCGCACGaaCACGCugccgcaguaGGCGCa -3' miRNA: 3'- -CCGGGcg-----------GGUGUGCgaGUGCG----------CCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 3928 | 0.67 | 0.558964 |
Target: 5'- cGCCgGCCUccggguaggccauggGCGCGUaCGCGCGcCGCa -3' miRNA: 3'- cCGGgCGGG---------------UGUGCGaGUGCGCcGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 109502 | 0.67 | 0.558964 |
Target: 5'- gGGCCCgcGCCCgccgcgggguuuauuGCGCGCcCGcCGCGG-GCc -3' miRNA: 3'- -CCGGG--CGGG---------------UGUGCGaGU-GCGCCgCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 37967 | 0.67 | 0.555141 |
Target: 5'- uGCCCccgaagucggacGUCUucgcguggACGCGCU-ACGCGGCGCc -3' miRNA: 3'- cCGGG------------CGGG--------UGUGCGAgUGCGCCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 100784 | 0.67 | 0.555141 |
Target: 5'- aGGCgCGUCCGCAgGCcagCAgGUcccggaagGGCGCg -3' miRNA: 3'- -CCGgGCGGGUGUgCGa--GUgCG--------CCGCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 82747 | 0.67 | 0.555141 |
Target: 5'- aGCCCGUCUGCGa--UCGCGCGGUc- -3' miRNA: 3'- cCGGGCGGGUGUgcgAGUGCGCCGcg -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 50915 | 0.67 | 0.555141 |
Target: 5'- cGGCgCCGCCU-CGC-CggGCGCGGgGCu -3' miRNA: 3'- -CCG-GGCGGGuGUGcGagUGCGCCgCG- -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 43398 | 0.67 | 0.555141 |
Target: 5'- cGGCaCCGUCCAgGCGC-CGgG-GGCGg -3' miRNA: 3'- -CCG-GGCGGGUgUGCGaGUgCgCCGCg -5' |
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23757 | 3' | -63.1 | NC_005261.1 | + | 13004 | 0.67 | 0.555141 |
Target: 5'- aGGCCCgcgaGCCCgaGCGCGCcccccagcacCACGagccagGGCGCg -3' miRNA: 3'- -CCGGG----CGGG--UGUGCGa---------GUGCg-----CCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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