miRNA display CGI

Results 21 - 40 of 872 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23757	3'	-63.1	NC_005261.1	+	2723	0.7	0.348736
	Target:  5'- uGGCCCcgGCCgACuuGCGCUUgcgcCGCGGCGg -3' miRNA:   3'- -CCGGG--CGGgUG--UGCGAGu---GCGCCGCg -5'
23757	3'	-63.1	NC_005261.1	+	2776	0.69	0.428191
	Target:  5'- aGGCCCGCCCcCGagggGCUgcCGC-CGGCGg -3' miRNA:   3'- -CCGGGCGGGuGUg---CGA--GUGcGCCGCg -5'
23757	3'	-63.1	NC_005261.1	+	2822	0.73	0.25038
	Target:  5'- cGGCCCcaGCCCGa--GCUCGgGCGGCa- -3' miRNA:   3'- -CCGGG--CGGGUgugCGAGUgCGCCGcg -5'
23757	3'	-63.1	NC_005261.1	+	2994	0.66	0.59366
	Target:  5'- cGGCCUggcgGCCCgGCGCcgggGCUCcCGCGG-GCc -3' miRNA:   3'- -CCGGG----CGGG-UGUG----CGAGuGCGCCgCG- -5'
23757	3'	-63.1	NC_005261.1	+	3316	0.75	0.171472
	Target:  5'- cGGCCCGCauguccuccaccuCCACcCGCgC-CGCGGCGCc -3' miRNA:   3'- -CCGGGCG-------------GGUGuGCGaGuGCGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	3433	0.7	0.371438
	Target:  5'- gGGCCagCGUCCAgGCGggCGCGCGGgcCGCc -3' miRNA:   3'- -CCGG--GCGGGUgUGCgaGUGCGCC--GCG- -5'
23757	3'	-63.1	NC_005261.1	+	3532	0.74	0.207956
	Target:  5'- cGGCggCCGCCUcgGCGCGCa-GCGCGGCGg -3' miRNA:   3'- -CCG--GGCGGG--UGUGCGagUGCGCCGCg -5'
23757	3'	-63.1	NC_005261.1	+	3565	0.7	0.379227
	Target:  5'- cGGCgCCGCUaaggcgCGCGCGCUCcacCGCGuCGCg -3' miRNA:   3'- -CCG-GGCGG------GUGUGCGAGu--GCGCcGCG- -5'
23757	3'	-63.1	NC_005261.1	+	3623	0.68	0.462834
	Target:  5'- uGCCCGgagCACGCGCUC-CG-GGUGCg -3' miRNA:   3'- cCGGGCgg-GUGUGCGAGuGCgCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	3690	0.67	0.530493
	Target:  5'- cGGCCCGCugcagccgagagcaCCgggagcucagACGCGC-CGCugccggacgcgccgGCGGCGCa -3' miRNA:   3'- -CCGGGCG--------------GG----------UGUGCGaGUG--------------CGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	3795	0.74	0.200254
	Target:  5'- cGGUCCGCCagcucgCGCAgcCGCUCGCGCgcugccgcgggcccgGGCGCu -3' miRNA:   3'- -CCGGGCGG------GUGU--GCGAGUGCG---------------CCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	3870	0.73	0.256158
	Target:  5'- cGGCCgGCgagcacggCGCGCaGCUCggcgaGCGCGGCGCg -3' miRNA:   3'- -CCGGgCGg-------GUGUG-CGAG-----UGCGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	3928	0.67	0.558964
	Target:  5'- cGCCgGCCUccggguaggccauggGCGCGUaCGCGCGcCGCa -3' miRNA:   3'- cCGGgCGGG---------------UGUGCGaGUGCGCcGCG- -5'
23757	3'	-63.1	NC_005261.1	+	4039	0.73	0.228336
	Target:  5'- cGGCagCGCCCACagcGCGUUCuGCGCGGCcaugGCg -3' miRNA:   3'- -CCGg-GCGGGUG---UGCGAG-UGCGCCG----CG- -5'
23757	3'	-63.1	NC_005261.1	+	4127	0.7	0.371438
	Target:  5'- uGGCCCcggcaGCCCuGCACGCgcCGCuGCagcaGGCGCg -3' miRNA:   3'- -CCGGG-----CGGG-UGUGCGa-GUG-CG----CCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	4181	0.71	0.322823
	Target:  5'- gGGCCCGCgagCUuCGCGCUCugcagccaggccaugGCgucGCGGCGCg -3' miRNA:   3'- -CCGGGCG---GGuGUGCGAG---------------UG---CGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	4300	0.73	0.256158
	Target:  5'- gGGcCCCGCggCCGC-CGCguagCGCGCGGcCGCc -3' miRNA:   3'- -CC-GGGCG--GGUGuGCGa---GUGCGCC-GCG- -5'
23757	3'	-63.1	NC_005261.1	+	4358	0.73	0.239146
	Target:  5'- aGGCCCucgcgagugucGCCCGCGcCGCcgaagcgCACGCGGCcggGCg -3' miRNA:   3'- -CCGGG-----------CGGGUGU-GCGa------GUGCGCCG---CG- -5'
23757	3'	-63.1	NC_005261.1	+	4454	0.76	0.159477
	Target:  5'- gGGCCCuccagcggcggcgGCCCGuCGCGCggCGcCGCGGCGUa -3' miRNA:   3'- -CCGGG-------------CGGGU-GUGCGa-GU-GCGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	4506	0.76	0.152277
	Target:  5'- gGGCCCcagucgcgcGCCCGCGCGggCGcCGCGGCGa -3' miRNA:   3'- -CCGGG---------CGGGUGUGCgaGU-GCGCCGCg -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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