miRNA display CGI


Results 61 - 80 of 872 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23757 3' -63.1 NC_005261.1 + 11887 0.8 0.085896
Target:  5'- aGCCCGCCCGCACGCgcgccCGcCGCGG-GCc -3'
miRNA:   3'- cCGGGCGGGUGUGCGa----GU-GCGCCgCG- -5'
23757 3' -63.1 NC_005261.1 + 11939 0.83 0.048901
Target:  5'- cGGCCCGCgCCGCgGCgGCUCGCcCGGCGCg -3'
miRNA:   3'- -CCGGGCG-GGUG-UG-CGAGUGcGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 12023 0.67 0.508103
Target:  5'- cGCUCGCCCGCgacGCGCUCGagccccaGcCGGaGCa -3'
miRNA:   3'- cCGGGCGGGUG---UGCGAGUg------C-GCCgCG- -5'
23757 3' -63.1 NC_005261.1 + 12073 0.73 0.255576
Target:  5'- cGGCagcggCGUCCGCGCcggggcgGCUCaaagGCGCGGCGCc -3'
miRNA:   3'- -CCGg----GCGGGUGUG-------CGAG----UGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 12124 0.68 0.488847
Target:  5'- cGCCaggauggCGCCCGC-CGC-CGCGgCGGcCGCg -3'
miRNA:   3'- cCGG-------GCGGGUGuGCGaGUGC-GCC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 12291 0.69 0.395128
Target:  5'- aGUCCGCguCCGC-CGCgggCACG-GGCGCg -3'
miRNA:   3'- cCGGGCG--GGUGuGCGa--GUGCgCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 12321 0.69 0.428191
Target:  5'- aGCCgGCgggCGCGCGCUUggccgGCGCGGcCGCc -3'
miRNA:   3'- cCGGgCGg--GUGUGCGAG-----UGCGCC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 12504 0.74 0.212899
Target:  5'- uGGCCC-CCCGgGCGaC-CGCGCGGgGCc -3'
miRNA:   3'- -CCGGGcGGGUgUGC-GaGUGCGCCgCG- -5'
23757 3' -63.1 NC_005261.1 + 12641 0.67 0.508103
Target:  5'- cGGCgCGgUCugGgGC-CGCGcCGGCGCg -3'
miRNA:   3'- -CCGgGCgGGugUgCGaGUGC-GCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 12785 0.7 0.356192
Target:  5'- gGGCUCGUCgGCGaGCUCGuCGuCGGCGUc -3'
miRNA:   3'- -CCGGGCGGgUGUgCGAGU-GC-GCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 12943 0.74 0.217943
Target:  5'- aGGUgCGCUU-CugGCcCGCGCGGCGCg -3'
miRNA:   3'- -CCGgGCGGGuGugCGaGUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 13004 0.67 0.555141
Target:  5'- aGGCCCgcgaGCCCgaGCGCGCcccccagcacCACGagccagGGCGCg -3'
miRNA:   3'- -CCGGG----CGGG--UGUGCGa---------GUGCg-----CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 13077 0.67 0.545618
Target:  5'- cGUCCGCCgGCcCGUcggCGgGCGGCGg -3'
miRNA:   3'- cCGGGCGGgUGuGCGa--GUgCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 13314 0.73 0.25038
Target:  5'- gGGCCucguacgcagCGCCCuCGCaCUCGCGCGGCcaGCg -3'
miRNA:   3'- -CCGG----------GCGGGuGUGcGAGUGCGCCG--CG- -5'
23757 3' -63.1 NC_005261.1 + 14066 0.66 0.564712
Target:  5'- aGGCCgCGUCCAgG-GC-CACGuCGGCGa -3'
miRNA:   3'- -CCGG-GCGGGUgUgCGaGUGC-GCCGCg -5'
23757 3' -63.1 NC_005261.1 + 14137 0.67 0.545618
Target:  5'- gGGCaguCGCUCGCgaggACGCUCcagccGCGaaCGGCGCg -3'
miRNA:   3'- -CCGg--GCGGGUG----UGCGAG-----UGC--GCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 14384 0.71 0.322823
Target:  5'- uGGCCCGCaucgCCAgACGCuucucucaguuccucUCGCGC-GCGCu -3'
miRNA:   3'- -CCGGGCG----GGUgUGCG---------------AGUGCGcCGCG- -5'
23757 3' -63.1 NC_005261.1 + 14443 0.76 0.156029
Target:  5'- cGGCUCGCUCGCGgGg-CGCGCGGCGg -3'
miRNA:   3'- -CCGGGCGGGUGUgCgaGUGCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 14777 0.67 0.508103
Target:  5'- gGGgCCGCCCcgcGCAggugcCGCUCcCGCaGGCuGCg -3'
miRNA:   3'- -CCgGGCGGG---UGU-----GCGAGuGCG-CCG-CG- -5'
23757 3' -63.1 NC_005261.1 + 14857 0.67 0.526735
Target:  5'- cGGCggCGCaUCGCGCaGUUCGCcaucGCGGCGCa -3'
miRNA:   3'- -CCGg-GCG-GGUGUG-CGAGUG----CGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.