miRNA display CGI

Results 81 - 100 of 872 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23757	3'	-63.1	NC_005261.1	+	15181	0.69	0.395128
	Target:  5'- cGGCggCGCCCGCgggaaACGCcgccaUCGCGCGGuCGUa -3' miRNA:   3'- -CCGg-GCGGGUG-----UGCG-----AGUGCGCC-GCG- -5'
23757	3'	-63.1	NC_005261.1	+	15243	0.72	0.29314
	Target:  5'- aGGcCCCGCUCGCAgugggcCGCgaUCGCcccgGCGGCGCc -3' miRNA:   3'- -CC-GGGCGGGUGU------GCG--AGUG----CGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	15490	0.67	0.536148
	Target:  5'- cGCgCCGCUCGC-UGCggGCGgGGCGUg -3' miRNA:   3'- cCG-GGCGGGUGuGCGagUGCgCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	15791	0.68	0.445324
	Target:  5'- gGGCgCCGCCCGCGCGgC-CA-GCGcCGCc -3' miRNA:   3'- -CCG-GGCGGGUGUGC-GaGUgCGCcGCG- -5'
23757	3'	-63.1	NC_005261.1	+	16060	0.73	0.244709
	Target:  5'- gGGCCCGCgCCgagccgGCGCGUguagacgaagUACGCGGCGg -3' miRNA:   3'- -CCGGGCG-GG------UGUGCGa---------GUGCGCCGCg -5'
23757	3'	-63.1	NC_005261.1	+	16106	0.7	0.341391
	Target:  5'- cGGCggCgGCCaCGCACGCgaUCAcCGCGGcCGCg -3' miRNA:   3'- -CCG--GgCGG-GUGUGCG--AGU-GCGCC-GCG- -5'
23757	3'	-63.1	NC_005261.1	+	16281	0.66	0.564712
	Target:  5'- cGGCUCGCCCGgggggGCGCcgUCGggcccaGCGGCGg -3' miRNA:   3'- -CCGGGCGGGUg----UGCG--AGUg-----CGCCGCg -5'
23757	3'	-63.1	NC_005261.1	+	16388	0.68	0.462834
	Target:  5'- gGGCCuCGCCguCGucguCGC-CGgGCGGUGCg -3' miRNA:   3'- -CCGG-GCGGguGU----GCGaGUgCGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	16992	0.7	0.371438
	Target:  5'- gGGUCCGCgaucagcgCCAgCAUGUcgCACGCGGcCGCg -3' miRNA:   3'- -CCGGGCG--------GGU-GUGCGa-GUGCGCC-GCG- -5'
23757	3'	-63.1	NC_005261.1	+	17090	0.67	0.545618
	Target:  5'- gGGCCCggugguguGCCa--GCGCUCGauguaguuguauCGCGGCGg -3' miRNA:   3'- -CCGGG--------CGGgugUGCGAGU------------GCGCCGCg -5'
23757	3'	-63.1	NC_005261.1	+	18059	0.67	0.526735
	Target:  5'- cGGUcgagUCGUCCAgGCccaGCUC-UGCGGCGCu -3' miRNA:   3'- -CCG----GGCGGGUgUG---CGAGuGCGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	18669	0.75	0.170648
	Target:  5'- gGGCCCcagcgggcgaagggGCCC-CAgGCUguUGCGGCGCa -3' miRNA:   3'- -CCGGG--------------CGGGuGUgCGAguGCGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	19075	0.66	0.583977
	Target:  5'- cGGCUC-UCgGCGCguGCUUGCGUGGCGUu -3' miRNA:   3'- -CCGGGcGGgUGUG--CGAGUGCGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	19302	0.71	0.299694
	Target:  5'- cGCCCGCgcuCCACACGUcCGUGCGGCa- -3' miRNA:   3'- cCGGGCG---GGUGUGCGaGUGCGCCGcg -5'
23757	3'	-63.1	NC_005261.1	+	19731	0.81	0.064902
	Target:  5'- aGGCCCcgaucuugaGCaCCACGCGCUCccGCGCGGgCGCg -3' miRNA:   3'- -CCGGG---------CG-GGUGUGCGAG--UGCGCC-GCG- -5'
23757	3'	-63.1	NC_005261.1	+	19817	0.67	0.526735
	Target:  5'- cGCCgGUCgAUgcaaaaguucaGCGCgCGCGCGGCGUc -3' miRNA:   3'- cCGGgCGGgUG-----------UGCGaGUGCGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	20006	0.66	0.603368
	Target:  5'- cGGCCCcugaCCCGCACcCgUC-CGCGGUcaGCg -3' miRNA:   3'- -CCGGGc---GGGUGUGcG-AGuGCGCCG--CG- -5'
23757	3'	-63.1	NC_005261.1	+	20127	0.75	0.175647
	Target:  5'- gGGCCCGCagcggcuCCGCgaGCGCUCAgGCcGCGCc -3' miRNA:   3'- -CCGGGCG-------GGUG--UGCGAGUgCGcCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	20215	0.71	0.318646
	Target:  5'- aGGCCCcgcGCCCGCugccuggccagcCGCUC-CGCcGCGCg -3' miRNA:   3'- -CCGGG---CGGGUGu-----------GCGAGuGCGcCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	20323	0.67	0.536148
	Target:  5'- gGGCCCcgaGCCgCGCACGagcgacgCcCGCGGCuGCc -3' miRNA:   3'- -CCGGG---CGG-GUGUGCga-----GuGCGCCG-CG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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