miRNA display CGI

Results 101 - 120 of 872 are showing below:
Show page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23757	3'	-63.1	NC_005261.1	+	20639	0.68	0.471723
	Target:  5'- cGGCCCgguucgccGCCCGCAcCGC-CGgugGCGGCaGCg -3' miRNA:   3'- -CCGGG--------CGGGUGU-GCGaGUg--CGCCG-CG- -5'
23757	3'	-63.1	NC_005261.1	+	21037	0.68	0.489756
	Target:  5'- gGGCgCGCaCCGUGCGC-CAUccuuuaaagGCGGCGCa -3' miRNA:   3'- -CCGgGCG-GGUGUGCGaGUG---------CGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	21127	0.66	0.59366
	Target:  5'- uGCCCaaGCCCcCACGagCGCGUGGUGa -3' miRNA:   3'- cCGGG--CGGGuGUGCgaGUGCGCCGCg -5'
23757	3'	-63.1	NC_005261.1	+	21161	0.73	0.239146
	Target:  5'- cGGCCCuGCCgaGCAgagaugcagcCGCUgGCGCGaGCGCg -3' miRNA:   3'- -CCGGG-CGGg-UGU----------GCGAgUGCGC-CGCG- -5'
23757	3'	-63.1	NC_005261.1	+	21232	0.66	0.611149
	Target:  5'- gGGCCCGUCgGCugGCggcuuuucaggGCGUGcCGCa -3' miRNA:   3'- -CCGGGCGGgUGugCGag---------UGCGCcGCG- -5'
23757	3'	-63.1	NC_005261.1	+	21350	0.7	0.371438
	Target:  5'- aGGucCCCGCCC-CugGCUugagcccugacCGCGCcggaGGCGCg -3' miRNA:   3'- -CC--GGGCGGGuGugCGA-----------GUGCG----CCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	21748	0.69	0.408155
	Target:  5'- cGGCUgcugCGCCUggaGCGCGCgccgggcgagccgC-CGCGGCGCg -3' miRNA:   3'- -CCGG----GCGGG---UGUGCGa------------GuGCGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	21814	0.69	0.395128
	Target:  5'- gGGCCgGgCCCGCgGCGggCGCGCGuGCGg -3' miRNA:   3'- -CCGGgC-GGGUG-UGCgaGUGCGC-CGCg -5'
23757	3'	-63.1	NC_005261.1	+	21846	0.75	0.166178
	Target:  5'- gGGCUCGCCCcgcagcugacgcuCGCGCUCGCGaacGCGCg -3' miRNA:   3'- -CCGGGCGGGu------------GUGCGAGUGCgc-CGCG- -5'
23757	3'	-63.1	NC_005261.1	+	22491	0.74	0.198367
	Target:  5'- aGCgCGCCCGCGggggGC-CACGCGGCGUu -3' miRNA:   3'- cCGgGCGGGUGUg---CGaGUGCGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	22629	0.73	0.256158
	Target:  5'- cGuCCCGCCCcgucccgucccuAgACGCgCugGCGGCGCc -3' miRNA:   3'- cC-GGGCGGG------------UgUGCGaGugCGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	22755	0.7	0.371438
	Target:  5'- cGGCggCgGCCCACGCG-UCugGgGGCGg -3' miRNA:   3'- -CCG--GgCGGGUGUGCgAGugCgCCGCg -5'
23757	3'	-63.1	NC_005261.1	+	23165	0.66	0.564712
	Target:  5'- gGGCCCGgCagGCGCGCcgggggCGacaGCGaGCGCg -3' miRNA:   3'- -CCGGGCgGg-UGUGCGa-----GUg--CGC-CGCG- -5'
23757	3'	-63.1	NC_005261.1	+	23207	0.72	0.27415
	Target:  5'- gGGCCCGCagcggcggCCGCGCGCaaaaGC-CGGUGCa -3' miRNA:   3'- -CCGGGCG--------GGUGUGCGag--UGcGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	23315	0.66	0.601425
	Target:  5'- uGGCCgagcagaaagaaGCCgACGag--CGCGCGGCGCa -3' miRNA:   3'- -CCGGg-----------CGGgUGUgcgaGUGCGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	23492	0.74	0.200254
	Target:  5'- gGGCCCGCCUggGCAgGCgcgggcccugggagCACGCGGUcggGCg -3' miRNA:   3'- -CCGGGCGGG--UGUgCGa-------------GUGCGCCG---CG- -5'
23757	3'	-63.1	NC_005261.1	+	23704	0.74	0.2124
	Target:  5'- aGGCCCGCCCggucggguggcaaGCGgGUggcCGCGCcgaGGCGCg -3' miRNA:   3'- -CCGGGCGGG-------------UGUgCGa--GUGCG---CCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	24538	0.73	0.228336
	Target:  5'- -cCCCGCCCAcguacCugGC-CGgGCGGCGCc -3' miRNA:   3'- ccGGGCGGGU-----GugCGaGUgCGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	25347	0.68	0.477997
	Target:  5'- gGGCCCucCCCACAaaccCGCUUggaacaaaaacccgGCaCGGCGCg -3' miRNA:   3'- -CCGGGc-GGGUGU----GCGAG--------------UGcGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	25802	0.66	0.564712
	Target:  5'- uGGa--GCUCAgGCGCcaUCugGUGGCGCc -3' miRNA:   3'- -CCgggCGGGUgUGCG--AGugCGCCGCG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home