miRNA display CGI


Results 41 - 60 of 872 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23757 3' -63.1 NC_005261.1 + 131441 0.7 0.387124
Target:  5'- cGCCCcccuuGCgCCGCGC-CUCGCG-GGCGCc -3'
miRNA:   3'- cCGGG-----CG-GGUGUGcGAGUGCgCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 131410 0.7 0.36376
Target:  5'- aGCCC-CCCGC-CGCUgccgGCaGCGGCGCc -3'
miRNA:   3'- cCGGGcGGGUGuGCGAg---UG-CGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 131186 0.74 0.193719
Target:  5'- cGGCUaCGCCCGCgGCGCggUCGcCGcCGGCGCg -3'
miRNA:   3'- -CCGG-GCGGGUG-UGCG--AGU-GC-GCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 131127 0.7 0.341391
Target:  5'- gGGCUCGCCUuccccgacCugGuCUCuuuUGCGGCGCu -3'
miRNA:   3'- -CCGGGCGGGu-------GugC-GAGu--GCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 130826 0.7 0.356192
Target:  5'- gGGCCaGgCCACcguGCGCUCAaccuUGCGcGCGCg -3'
miRNA:   3'- -CCGGgCgGGUG---UGCGAGU----GCGC-CGCG- -5'
23757 3' -63.1 NC_005261.1 + 130617 0.73 0.244148
Target:  5'- uGCCUGCgCCuucaacaGCGCGCggggCGCGCGuGCGCu -3'
miRNA:   3'- cCGGGCG-GG-------UGUGCGa---GUGCGC-CGCG- -5'
23757 3' -63.1 NC_005261.1 + 130566 0.74 0.193719
Target:  5'- cGGCCCGCCgggcggaagCGC-CGC-CGCGCGGCcccGCg -3'
miRNA:   3'- -CCGGGCGG---------GUGuGCGaGUGCGCCG---CG- -5'
23757 3' -63.1 NC_005261.1 + 130430 0.67 0.508103
Target:  5'- aGCCCGgCCGCgGCGCcUACGUGGUc- -3'
miRNA:   3'- cCGGGCgGGUG-UGCGaGUGCGCCGcg -5'
23757 3' -63.1 NC_005261.1 + 130335 0.69 0.411454
Target:  5'- cGGCCCGgCCGCGCucggGgaCGCGCuGCGg -3'
miRNA:   3'- -CCGGGCgGGUGUG----CgaGUGCGcCGCg -5'
23757 3' -63.1 NC_005261.1 + 130289 0.67 0.554186
Target:  5'- cGCCaCGCCCGCACaGC-CACccaaccagccgcuGCaGCGCc -3'
miRNA:   3'- cCGG-GCGGGUGUG-CGaGUG-------------CGcCGCG- -5'
23757 3' -63.1 NC_005261.1 + 130233 0.76 0.152277
Target:  5'- cGGCCCGCUCAgGCGCcgCGCcaGCGGCu- -3'
miRNA:   3'- -CCGGGCGGGUgUGCGa-GUG--CGCCGcg -5'
23757 3' -63.1 NC_005261.1 + 130137 0.66 0.581078
Target:  5'- cGCgCCGUCCGCcgaGCGCacCACguccuccaccgucaGCGGCGCc -3'
miRNA:   3'- cCG-GGCGGGUG---UGCGa-GUG--------------CGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 129783 0.75 0.184267
Target:  5'- cGGCCCggccuucgccuucGCCUcCGCGCUCGCGCccGCGCc -3'
miRNA:   3'- -CCGGG-------------CGGGuGUGCGAGUGCGc-CGCG- -5'
23757 3' -63.1 NC_005261.1 + 129719 0.71 0.32704
Target:  5'- aGGCCCGCCgGCugcaGCggcaGgGCGGCGg -3'
miRNA:   3'- -CCGGGCGGgUGug--CGag--UgCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 129585 0.71 0.334159
Target:  5'- cGGCCgCGCgCCGCG-GgaCACGCGGCa- -3'
miRNA:   3'- -CCGG-GCG-GGUGUgCgaGUGCGCCGcg -5'
23757 3' -63.1 NC_005261.1 + 129357 0.72 0.262046
Target:  5'- cGCCCccuUCCGCGCGCgggUCGCGCGGCu- -3'
miRNA:   3'- cCGGGc--GGGUGUGCG---AGUGCGCCGcg -5'
23757 3' -63.1 NC_005261.1 + 129297 0.74 0.203113
Target:  5'- cGCCCGCCCccggcgcccCGCGCcUGCGCuGGCGCc -3'
miRNA:   3'- cCGGGCGGGu--------GUGCGaGUGCG-CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 129177 0.72 0.268043
Target:  5'- cGCUCGUugcugCCGCAgGCcagCGCGUGGCGCa -3'
miRNA:   3'- cCGGGCG-----GGUGUgCGa--GUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 129042 0.66 0.583977
Target:  5'- cGGCagaCGCCCACGCuGC-CGCGCccuacGUGUu -3'
miRNA:   3'- -CCGg--GCGGGUGUG-CGaGUGCGc----CGCG- -5'
23757 3' -63.1 NC_005261.1 + 128816 0.77 0.138075
Target:  5'- gGGCUCGCgCUGCggcugACGCUCGCGCGGCu- -3'
miRNA:   3'- -CCGGGCG-GGUG-----UGCGAGUGCGCCGcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.