miRNA display CGI

Results 61 - 80 of 872 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23757	3'	-63.1	NC_005261.1	+	128430	0.67	0.498892
	Target:  5'- aGGCCgCGCaCCAUG-GCgaacaGCGCGGCGg -3' miRNA:   3'- -CCGG-GCG-GGUGUgCGag---UGCGCCGCg -5'
23757	3'	-63.1	NC_005261.1	+	128234	0.73	0.233689
	Target:  5'- gGGCCCGCCC--GCGCUCAUGagcCGGaaGCa -3' miRNA:   3'- -CCGGGCGGGugUGCGAGUGC---GCCg-CG- -5'
23757	3'	-63.1	NC_005261.1	+	127903	0.75	0.183389
	Target:  5'- gGGCCCggGCCUgggcuugggcucggGCcCGCUCgAUGCGGCGCa -3' miRNA:   3'- -CCGGG--CGGG--------------UGuGCGAG-UGCGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	127800	0.71	0.313141
	Target:  5'- gGGCCgGCgCCGCGgcggcgggcCGCUCGCGCucgcGGcCGCg -3' miRNA:   3'- -CCGGgCG-GGUGU---------GCGAGUGCG----CC-GCG- -5'
23757	3'	-63.1	NC_005261.1	+	127723	0.67	0.517386
	Target:  5'- uGGCCUGCCUgguaGCGggaGC-UugGCGGCGg -3' miRNA:   3'- -CCGGGCGGG----UGUg--CGaGugCGCCGCg -5'
23757	3'	-63.1	NC_005261.1	+	127625	0.68	0.462834
	Target:  5'- cGGCCgGCCgGaCGCGacgGCgGCGGCGCc -3' miRNA:   3'- -CCGGgCGGgU-GUGCgagUG-CGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	127321	0.68	0.488847
	Target:  5'- gGGCCCugccGCCCGCGgGggCcggagcgGCGgGGCGCu -3' miRNA:   3'- -CCGGG----CGGGUGUgCgaG-------UGCgCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	127276	0.71	0.334159
	Target:  5'- gGGCCCGCCCGC-CGCg---GgGGCaGCc -3' miRNA:   3'- -CCGGGCGGGUGuGCGagugCgCCG-CG- -5'
23757	3'	-63.1	NC_005261.1	+	127142	0.69	0.411454
	Target:  5'- cGCCCGCCCcagagacgACGCGaCUCGgCuCGGUGUg -3' miRNA:   3'- cCGGGCGGG--------UGUGC-GAGU-GcGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	126943	0.66	0.613096
	Target:  5'- cGGCCagggGCgCCGgGCGCggGgGCGGCaGCg -3' miRNA:   3'- -CCGGg---CG-GGUgUGCGagUgCGCCG-CG- -5'
23757	3'	-63.1	NC_005261.1	+	126695	0.66	0.603368
	Target:  5'- aGGCCgGCggugcgggaagCgGCugGUUCGCGUGcGCGUu -3' miRNA:   3'- -CCGGgCG-----------GgUGugCGAGUGCGC-CGCG- -5'
23757	3'	-63.1	NC_005261.1	+	126607	0.79	0.102476
	Target:  5'- aGGCCCGCgUAC-CGCUCuuccCGCGcGCGCa -3' miRNA:   3'- -CCGGGCGgGUGuGCGAGu---GCGC-CGCG- -5'
23757	3'	-63.1	NC_005261.1	+	126533	0.71	0.297716
	Target:  5'- cGCCCGCCgcgccucggcCACGCGCcgccgUCGCGCGcaaaugcugcagcaGCGCg -3' miRNA:   3'- cCGGGCGG----------GUGUGCG-----AGUGCGC--------------CGCG- -5'
23757	3'	-63.1	NC_005261.1	+	126457	0.71	0.313141
	Target:  5'- aGCCgCGCCaGCGCGCUCGCcucGCGGUa- -3' miRNA:   3'- cCGG-GCGGgUGUGCGAGUG---CGCCGcg -5'
23757	3'	-63.1	NC_005261.1	+	126073	0.66	0.583977
	Target:  5'- cGCCCGCCgGCcucgGCGggCGCGCccaucuucGCGCg -3' miRNA:   3'- cCGGGCGGgUG----UGCgaGUGCGc-------CGCG- -5'
23757	3'	-63.1	NC_005261.1	+	126036	0.68	0.471723
	Target:  5'- cGGCCgCGCgUACGagUGCUCcCGCuccGGCGCc -3' miRNA:   3'- -CCGG-GCGgGUGU--GCGAGuGCG---CCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	125923	0.73	0.233689
	Target:  5'- gGGCUCGCCaCGCGCacgguagccGCUgGCGCGGgGUc -3' miRNA:   3'- -CCGGGCGG-GUGUG---------CGAgUGCGCCgCG- -5'
23757	3'	-63.1	NC_005261.1	+	125620	0.66	0.590752
	Target:  5'- cGCCCGCCCuuagaaguccagcaGCugGUUgAgGCGGUcccccaGCa -3' miRNA:   3'- cCGGGCGGG--------------UGugCGAgUgCGCCG------CG- -5'
23757	3'	-63.1	NC_005261.1	+	125530	0.69	0.428191
	Target:  5'- cGCUCGCgCCGCcCGCa-GgGCGGCGCc -3' miRNA:   3'- cCGGGCG-GGUGuGCGagUgCGCCGCG- -5'
23757	3'	-63.1	NC_005261.1	+	125301	0.72	0.29314
	Target:  5'- gGGCgCCGgaCCCGCggGCGCUC-CGCGGCcucgGCg -3' miRNA:   3'- -CCG-GGC--GGGUG--UGCGAGuGCGCCG----CG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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