miRNA display CGI


Results 81 - 100 of 872 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23757 3' -63.1 NC_005261.1 + 125104 0.74 0.212899
Target:  5'- cGCCC-CCUuccgggGCGCGCUCGgGUGGUGCg -3'
miRNA:   3'- cCGGGcGGG------UGUGCGAGUgCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 124932 0.77 0.131439
Target:  5'- aGGCuCCGCCgCGCGCGCUgUGC-CGGCGCc -3'
miRNA:   3'- -CCG-GGCGG-GUGUGCGA-GUGcGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 124886 0.71 0.324926
Target:  5'- uGGCCCGgguuccuggccgccCCCGC-CGC-CACGCGGgaagcCGCg -3'
miRNA:   3'- -CCGGGC--------------GGGUGuGCGaGUGCGCC-----GCG- -5'
23757 3' -63.1 NC_005261.1 + 124787 0.66 0.613096
Target:  5'- gGGCCCuuCCgACAgcCGCUCGuCGCGcucuagguGCGCg -3'
miRNA:   3'- -CCGGGc-GGgUGU--GCGAGU-GCGC--------CGCG- -5'
23757 3' -63.1 NC_005261.1 + 124576 0.72 0.286698
Target:  5'- cGCUCGCgcaCCACGCGCUgAUcguuggGCGGCGUg -3'
miRNA:   3'- cCGGGCG---GGUGUGCGAgUG------CGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 124265 0.74 0.203113
Target:  5'- cGGCgCCGCCCGCGCGC-C-C-CGGcCGCg -3'
miRNA:   3'- -CCG-GGCGGGUGUGCGaGuGcGCC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 124112 0.66 0.59366
Target:  5'- gGGCCgGCaCCGCAgucaGCaUCACGCGcagcucGUGCc -3'
miRNA:   3'- -CCGGgCG-GGUGUg---CG-AGUGCGC------CGCG- -5'
23757 3' -63.1 NC_005261.1 + 124073 0.66 0.59366
Target:  5'- cGGCCgacugcaGCCCG-GCGCcCGCGUaGCGCg -3'
miRNA:   3'- -CCGGg------CGGGUgUGCGaGUGCGcCGCG- -5'
23757 3' -63.1 NC_005261.1 + 123938 0.69 0.419772
Target:  5'- cGCCCGCUagauacagccagCGCAgcgccCGCUC-CGCGaGCGCu -3'
miRNA:   3'- cCGGGCGG------------GUGU-----GCGAGuGCGC-CGCG- -5'
23757 3' -63.1 NC_005261.1 + 123254 0.67 0.526735
Target:  5'- gGGcCCCGCCCAU-CGCccgUgACGaGGUGCg -3'
miRNA:   3'- -CC-GGGCGGGUGuGCG---AgUGCgCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 123074 0.67 0.498892
Target:  5'- aGGCCCcgagaggcgGCCgGcCACGCcauuUCGcCGCGGCGg -3'
miRNA:   3'- -CCGGG---------CGGgU-GUGCG----AGU-GCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 122936 0.71 0.32704
Target:  5'- aGCgCGgCCGCGCGCUCAaccccaaacaGCGGgGCc -3'
miRNA:   3'- cCGgGCgGGUGUGCGAGUg---------CGCCgCG- -5'
23757 3' -63.1 NC_005261.1 + 122817 0.75 0.180343
Target:  5'- cGCCCGCCaGCACcCgCGCuGCGGCGCg -3'
miRNA:   3'- cCGGGCGGgUGUGcGaGUG-CGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 122716 0.77 0.141507
Target:  5'- cGGCCgCGCCguCgAUGUUCACGuCGGCGCc -3'
miRNA:   3'- -CCGG-GCGGguG-UGCGAGUGC-GCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 122644 0.69 0.428191
Target:  5'- aGGCCCG---GCGCGCgUACGUgGGCGCg -3'
miRNA:   3'- -CCGGGCgggUGUGCGaGUGCG-CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 122349 0.71 0.313141
Target:  5'- aGCUCGCCUGgcggcCGCgGCUCGCGCGGCc- -3'
miRNA:   3'- cCGGGCGGGU-----GUG-CGAGUGCGCCGcg -5'
23757 3' -63.1 NC_005261.1 + 122311 0.7 0.371438
Target:  5'- aGGCgaCGCCCggGCcgGCGgUCAgGUGGCGCu -3'
miRNA:   3'- -CCGg-GCGGG--UG--UGCgAGUgCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 122082 0.67 0.508103
Target:  5'- cGCaCGCCCGCGCGCagccaGCaGGCGUa -3'
miRNA:   3'- cCGgGCGGGUGUGCGagug-CG-CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 121821 0.66 0.603368
Target:  5'- gGGCuCUGCggGC-CGC-CGCgGCGGCGCa -3'
miRNA:   3'- -CCG-GGCGggUGuGCGaGUG-CGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 121783 0.67 0.545618
Target:  5'- uGGCCgCgGCCgGCGgGCUgggCAgGgGGCGCg -3'
miRNA:   3'- -CCGG-G-CGGgUGUgCGA---GUgCgCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.