Results 21 - 40 of 872 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 104291 | 0.8 | 0.075652 |
Target: 5'- gGGCCUcgcagGCCCGCGCGCgcucaaagagCGCGCGGaCGCg -3' miRNA: 3'- -CCGGG-----CGGGUGUGCGa---------GUGCGCC-GCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 92580 | 0.81 | 0.070079 |
Target: 5'- cGCgCGCCCACGCGCgagCGCagccgcucGCGGCGCg -3' miRNA: 3'- cCGgGCGGGUGUGCGa--GUG--------CGCCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 63012 | 0.83 | 0.054218 |
Target: 5'- cGGCCgCGCCCGCGCGggCGC-CGGCGCc -3' miRNA: 3'- -CCGG-GCGGGUGUGCgaGUGcGCCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 67658 | 0.83 | 0.052838 |
Target: 5'- cGCCCGUCCGCGCGCg-GCGCcaGGCGCg -3' miRNA: 3'- cCGGGCGGGUGUGCGagUGCG--CCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 34366 | 0.83 | 0.051493 |
Target: 5'- gGGCgCCGCgcggcgCCGCGCGCagACGCGGCGCa -3' miRNA: 3'- -CCG-GGCG------GGUGUGCGagUGCGCCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 102367 | 0.83 | 0.050181 |
Target: 5'- aGCgCGCCUcaACGCGCUCcaGCGCGGCGCg -3' miRNA: 3'- cCGgGCGGG--UGUGCGAG--UGCGCCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 11939 | 0.83 | 0.048901 |
Target: 5'- cGGCCCGCgCCGCgGCgGCUCGCcCGGCGCg -3' miRNA: 3'- -CCGGGCG-GGUG-UG-CGAGUGcGCCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 133334 | 0.83 | 0.046436 |
Target: 5'- -uCCUGCCgGCACGCgCGCGCGGCGCu -3' miRNA: 3'- ccGGGCGGgUGUGCGaGUGCGCCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 76219 | 0.85 | 0.037736 |
Target: 5'- cGCCUGCgCCGCGCGCUUgacgagACGCGGCGCc -3' miRNA: 3'- cCGGGCG-GGUGUGCGAG------UGCGCCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 63540 | 0.85 | 0.035823 |
Target: 5'- cGGCCUGCCCGCGCGCcgugCcCGCuGGCGCg -3' miRNA: 3'- -CCGGGCGGGUGUGCGa---GuGCG-CCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 62849 | 0.82 | 0.055632 |
Target: 5'- uGGCgCGCCC-CGCGC-CACGCGGCGg -3' miRNA: 3'- -CCGgGCGGGuGUGCGaGUGCGCCGCg -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 91461 | 0.82 | 0.05857 |
Target: 5'- cGGcCCCGCCCGCGC-CUCccaGCGGCGCc -3' miRNA: 3'- -CC-GGGCGGGUGUGcGAGug-CGCCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 95200 | 0.81 | 0.070079 |
Target: 5'- gGGaCCCGCgCCGCcCGCcCGCGCGGUGCg -3' miRNA: 3'- -CC-GGGCG-GGUGuGCGaGUGCGCCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 82562 | 0.81 | 0.070079 |
Target: 5'- cGGCCgCGCgCCGCAgcaGCUCGCGCaGCGCg -3' miRNA: 3'- -CCGG-GCG-GGUGUg--CGAGUGCGcCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 67944 | 0.81 | 0.070079 |
Target: 5'- -cCCCGCCgGCcCGCUCGCGCGGcCGCc -3' miRNA: 3'- ccGGGCGGgUGuGCGAGUGCGCC-GCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 93147 | 0.81 | 0.070079 |
Target: 5'- gGGUCCGUCUGCA-GCUCgcACGCGGCGCa -3' miRNA: 3'- -CCGGGCGGGUGUgCGAG--UGCGCCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 95727 | 0.81 | 0.06831 |
Target: 5'- gGGCCCGCC---GCGCUCA-GCGGCGCc -3' miRNA: 3'- -CCGGGCGGgugUGCGAGUgCGCCGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 107869 | 0.81 | 0.064902 |
Target: 5'- cGG-CCGCCCGCGCGCUCGCGCc-CGCg -3' miRNA: 3'- -CCgGGCGGGUGUGCGAGUGCGccGCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 19731 | 0.81 | 0.064902 |
Target: 5'- aGGCCCcgaucuugaGCaCCACGCGCUCccGCGCGGgCGCg -3' miRNA: 3'- -CCGGG---------CG-GGUGUGCGAG--UGCGCC-GCG- -5' |
|||||||
23757 | 3' | -63.1 | NC_005261.1 | + | 35440 | 0.82 | 0.060094 |
Target: 5'- cGCCCGCCCGCccCGCgggucuagGCGCGGCGCg -3' miRNA: 3'- cCGGGCGGGUGu-GCGag------UGCGCCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home