miRNA display CGI


Results 1 - 20 of 872 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23757 3' -63.1 NC_005261.1 + 61060 0.66 0.564712
Target:  5'- gGGCCUGgagcacuucuuCCUGCcgGCGCUCACG-GGCaGCu -3'
miRNA:   3'- -CCGGGC-----------GGGUG--UGCGAGUGCgCCG-CG- -5'
23757 3' -63.1 NC_005261.1 + 48617 0.66 0.564712
Target:  5'- cGGCCgCGCCCAgcccCACGCcC-CGCcccuGCGCn -3'
miRNA:   3'- -CCGG-GCGGGU----GUGCGaGuGCGc---CGCG- -5'
23757 3' -63.1 NC_005261.1 + 47746 0.66 0.564712
Target:  5'- aGCCCGCUgGCGuCGUcCACcccgaGGCGCg -3'
miRNA:   3'- cCGGGCGGgUGU-GCGaGUGcg---CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 77659 0.66 0.564712
Target:  5'- cGGCCggCGCCUGCAgGCgcaggGCGCGGaCGg -3'
miRNA:   3'- -CCGG--GCGGGUGUgCGag---UGCGCC-GCg -5'
23757 3' -63.1 NC_005261.1 + 100901 0.66 0.564712
Target:  5'- cGGCCuCGCCgCGCAcCGC-CGCGa-GCGUc -3'
miRNA:   3'- -CCGG-GCGG-GUGU-GCGaGUGCgcCGCG- -5'
23757 3' -63.1 NC_005261.1 + 108212 0.66 0.564712
Target:  5'- cGCCaGCaCgGCGCGCUCcaGCaUGGCGCa -3'
miRNA:   3'- cCGGgCG-GgUGUGCGAG--UGcGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 106384 0.66 0.564712
Target:  5'- --gCCGUugCCGC-CGCUgucggcgacaucCGCGCGGCGCu -3'
miRNA:   3'- ccgGGCG--GGUGuGCGA------------GUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 39221 0.66 0.613096
Target:  5'- cGCCaugGCCCuCGCGCgCGC-CGGCGa -3'
miRNA:   3'- cCGGg--CGGGuGUGCGaGUGcGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 29431 0.66 0.573363
Target:  5'- gGGCCCGCggccguguucgugCCggagaugggGgACGCggggaagcagUACGCGGCGCu -3'
miRNA:   3'- -CCGGGCG-------------GG---------UgUGCGa---------GUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 91062 0.66 0.564712
Target:  5'- --gCCGCuUCAUcaACGCcuaCGCGCGGCGCc -3'
miRNA:   3'- ccgGGCG-GGUG--UGCGa--GUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 14066 0.66 0.564712
Target:  5'- aGGCCgCGUCCAgG-GC-CACGuCGGCGa -3'
miRNA:   3'- -CCGG-GCGGGUgUgCGaGUGC-GCCGCg -5'
23757 3' -63.1 NC_005261.1 + 25802 0.66 0.564712
Target:  5'- uGGa--GCUCAgGCGCcaUCugGUGGCGCc -3'
miRNA:   3'- -CCgggCGGGUgUGCG--AGugCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 79418 0.66 0.564712
Target:  5'- aGGCCCGUguCgGCGaGCUCGgCGCGcGUGUa -3'
miRNA:   3'- -CCGGGCG--GgUGUgCGAGU-GCGC-CGCG- -5'
23757 3' -63.1 NC_005261.1 + 75460 0.66 0.564712
Target:  5'- gGGCCaGuUCCAgGCGC-CGgGCGGCGg -3'
miRNA:   3'- -CCGGgC-GGGUgUGCGaGUgCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 16281 0.66 0.564712
Target:  5'- cGGCUCGCCCGgggggGCGCcgUCGggcccaGCGGCGg -3'
miRNA:   3'- -CCGGGCGGGUg----UGCG--AGUg-----CGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 53246 0.66 0.574326
Target:  5'- aGCUCGCCC-CGCGCgUC-C-CGGuCGCa -3'
miRNA:   3'- cCGGGCGGGuGUGCG-AGuGcGCC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 23165 0.66 0.564712
Target:  5'- gGGCCCGgCagGCGCGCcgggggCGacaGCGaGCGCg -3'
miRNA:   3'- -CCGGGCgGg-UGUGCGa-----GUg--CGC-CGCG- -5'
23757 3' -63.1 NC_005261.1 + 92752 0.66 0.564712
Target:  5'- aGCgCCGCCCGCGcCGCUCggAC-CGG-GCc -3'
miRNA:   3'- cCG-GGCGGGUGU-GCGAG--UGcGCCgCG- -5'
23757 3' -63.1 NC_005261.1 + 47107 0.66 0.564712
Target:  5'- aGCCCGUCCgugaggacguGCGCGUccaggucgUCGCGCacaGCGCc -3'
miRNA:   3'- cCGGGCGGG----------UGUGCG--------AGUGCGc--CGCG- -5'
23757 3' -63.1 NC_005261.1 + 106203 0.66 0.563753
Target:  5'- cGCCguuuaaacaaaagCGCCCGCGgcCGcCUgGCGCGGcCGCc -3'
miRNA:   3'- cCGG-------------GCGGGUGU--GC-GAgUGCGCC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.