miRNA display CGI


Results 21 - 40 of 872 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23757 3' -63.1 NC_005261.1 + 28286 0.66 0.603368
Target:  5'- cGCCgCGgCCGCGguCGuCUCcuucguuCGCGGCGCc -3'
miRNA:   3'- cCGG-GCgGGUGU--GC-GAGu------GCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 121821 0.66 0.603368
Target:  5'- gGGCuCUGCggGC-CGC-CGCgGCGGCGCa -3'
miRNA:   3'- -CCG-GGCGggUGuGCGaGUG-CGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 68985 0.66 0.603368
Target:  5'- cGGCCCuuuucgGgCCGCGCGggCGcCGCGGCu- -3'
miRNA:   3'- -CCGGG------CgGGUGUGCgaGU-GCGCCGcg -5'
23757 3' -63.1 NC_005261.1 + 47455 0.66 0.603368
Target:  5'- cGCCCGgCC---CGCUUGCGCGGgGg -3'
miRNA:   3'- cCGGGCgGGuguGCGAGUGCGCCgCg -5'
23757 3' -63.1 NC_005261.1 + 35813 0.66 0.603368
Target:  5'- cGGCCUggaccccgGCCC-CGagaGCUCggcgcagaaaAgGCGGCGCa -3'
miRNA:   3'- -CCGGG--------CGGGuGUg--CGAG----------UgCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 20006 0.66 0.603368
Target:  5'- cGGCCCcugaCCCGCACcCgUC-CGCGGUcaGCg -3'
miRNA:   3'- -CCGGGc---GGGUGUGcG-AGuGCGCCG--CG- -5'
23757 3' -63.1 NC_005261.1 + 117297 0.66 0.603368
Target:  5'- aGCCCGCCCuCGaGCcCAgcCcCGGCGCg -3'
miRNA:   3'- cCGGGCGGGuGUgCGaGU--GcGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 93866 0.66 0.603368
Target:  5'- aGGCgCGCgCACuccuuccaGCUCagcaGCGCGGuCGCc -3'
miRNA:   3'- -CCGgGCGgGUGug------CGAG----UGCGCC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 126695 0.66 0.603368
Target:  5'- aGGCCgGCggugcgggaagCgGCugGUUCGCGUGcGCGUu -3'
miRNA:   3'- -CCGGgCG-----------GgUGugCGAGUGCGC-CGCG- -5'
23757 3' -63.1 NC_005261.1 + 71253 0.66 0.603368
Target:  5'- aGCCgaGCCC-CGCGCcgagcagCACGC-GCGCc -3'
miRNA:   3'- cCGGg-CGGGuGUGCGa------GUGCGcCGCG- -5'
23757 3' -63.1 NC_005261.1 + 75372 0.66 0.603368
Target:  5'- cGGCguaccuggaCGCCCugGCGC--GCGCcaucgacgagGGCGCg -3'
miRNA:   3'- -CCGg--------GCGGGugUGCGagUGCG----------CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 23315 0.66 0.601425
Target:  5'- uGGCCgagcagaaagaaGCCgACGag--CGCGCGGCGCa -3'
miRNA:   3'- -CCGGg-----------CGGgUGUgcgaGUGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 95141 0.66 0.600453
Target:  5'- cGUCCGCCUGCugG-UCGCcgggaaccugcaguGCGGCGa -3'
miRNA:   3'- cCGGGCGGGUGugCgAGUG--------------CGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 79029 0.66 0.600453
Target:  5'- cGCCCggggcGCCCGCGCcCUUggcgucguccuugaGCGCGcGCGUg -3'
miRNA:   3'- cCGGG-----CGGGUGUGcGAG--------------UGCGC-CGCG- -5'
23757 3' -63.1 NC_005261.1 + 44011 0.66 0.59754
Target:  5'- aGCCCGgCUucggcgcggcgggcgGC-CGC-CGCGCGGCGg -3'
miRNA:   3'- cCGGGCgGG---------------UGuGCGaGUGCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 88483 0.66 0.59366
Target:  5'- uGCCgCGCCggaGCGCGC-CGCGCucgacccGCGCu -3'
miRNA:   3'- cCGG-GCGGg--UGUGCGaGUGCGc------CGCG- -5'
23757 3' -63.1 NC_005261.1 + 121164 0.66 0.59366
Target:  5'- aGGgUUGCCCGgGCGCUCgguGCaCGGgGCc -3'
miRNA:   3'- -CCgGGCGGGUgUGCGAG---UGcGCCgCG- -5'
23757 3' -63.1 NC_005261.1 + 98569 0.66 0.59366
Target:  5'- gGGCggCCGUCCuccGCGgGCUCgggcgaguAgGCGGCGCc -3'
miRNA:   3'- -CCG--GGCGGG---UGUgCGAG--------UgCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 59485 0.66 0.59366
Target:  5'- cGGCgCGgCCGcCGCGC-CA-GCGGCGg -3'
miRNA:   3'- -CCGgGCgGGU-GUGCGaGUgCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 83238 0.66 0.59366
Target:  5'- cGCCgGCCCACGgacuCGCcCugguuCGCGGUGa -3'
miRNA:   3'- cCGGgCGGGUGU----GCGaGu----GCGCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.