miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23758 3' -54 NC_005261.1 + 76242 0.67 0.932234
Target:  5'- gACGcGG-CGC-CUGAgccAGUucaACGUGGCCa -3'
miRNA:   3'- -UGUaCCuGCGcGACU---UCA---UGCACCGG- -5'
23758 3' -54 NC_005261.1 + 54329 0.67 0.932234
Target:  5'- gGCGUGGccgaGCGCGUacAGGU-CGaUGGCCa -3'
miRNA:   3'- -UGUACC----UGCGCGacUUCAuGC-ACCGG- -5'
23758 3' -54 NC_005261.1 + 94684 0.67 0.92694
Target:  5'- ----uGAgGCGCUGGccaccgAGgACGUGGCCg -3'
miRNA:   3'- uguacCUgCGCGACU------UCaUGCACCGG- -5'
23758 3' -54 NC_005261.1 + 37873 0.67 0.92694
Target:  5'- cGCcUGGcggcGCGUGCUGGAGccCGagcUGGCCa -3'
miRNA:   3'- -UGuACC----UGCGCGACUUCauGC---ACCGG- -5'
23758 3' -54 NC_005261.1 + 15283 0.67 0.915608
Target:  5'- cGCcgGGGCGCGC---GGU-CGcGGCCu -3'
miRNA:   3'- -UGuaCCUGCGCGacuUCAuGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 39783 0.68 0.890003
Target:  5'- ---aGGACGuCGCcgGggGgcgGCGcGGCCg -3'
miRNA:   3'- uguaCCUGC-GCGa-CuuCa--UGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 30214 0.68 0.890003
Target:  5'- ---cGGcCGCGCUGgcGgcgcgaacCGUGGCCc -3'
miRNA:   3'- uguaCCuGCGCGACuuCau------GCACCGG- -5'
23758 3' -54 NC_005261.1 + 33897 0.68 0.895432
Target:  5'- cACcgGGGCGCGCguauaaaGCGgGGCCg -3'
miRNA:   3'- -UGuaCCUGCGCGacuuca-UGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 68094 0.68 0.896766
Target:  5'- gGCggGGAggccgugaaguuCGgGCUGGAGcUGCGcgGGCCg -3'
miRNA:   3'- -UGuaCCU------------GCgCGACUUC-AUGCa-CCGG- -5'
23758 3' -54 NC_005261.1 + 75501 0.68 0.883004
Target:  5'- aGCGcGGG-GCGCUGGAGgcgcacgcCGUGGUCg -3'
miRNA:   3'- -UGUaCCUgCGCGACUUCau------GCACCGG- -5'
23758 3' -54 NC_005261.1 + 111985 0.68 0.896766
Target:  5'- ---cGGG-GCGCUGGAGUccAUG-GGCCa -3'
miRNA:   3'- uguaCCUgCGCGACUUCA--UGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 48123 0.69 0.860643
Target:  5'- gGCAUGGcGCGCGCgggaaagaggGggGaGgGUGGCg -3'
miRNA:   3'- -UGUACC-UGCGCGa---------CuuCaUgCACCGg -5'
23758 3' -54 NC_005261.1 + 111607 0.69 0.852753
Target:  5'- -aGUGGGCGCgGCUGGGcUGCG-GcGCCg -3'
miRNA:   3'- ugUACCUGCG-CGACUUcAUGCaC-CGG- -5'
23758 3' -54 NC_005261.1 + 29684 0.69 0.852753
Target:  5'- -uGUGGGCGCuGCcgcacgUGgcGgccUGCGUGGCCa -3'
miRNA:   3'- ugUACCUGCG-CG------ACuuC---AUGCACCGG- -5'
23758 3' -54 NC_005261.1 + 51002 0.69 0.844656
Target:  5'- cGCGUGGGCGCgGCgGGAGcucgGCGaGcGCCa -3'
miRNA:   3'- -UGUACCUGCG-CGaCUUCa---UGCaC-CGG- -5'
23758 3' -54 NC_005261.1 + 28836 0.69 0.836358
Target:  5'- ---cGGcCGCgGCUGAGGcggccguCGUGGCCg -3'
miRNA:   3'- uguaCCuGCG-CGACUUCau-----GCACCGG- -5'
23758 3' -54 NC_005261.1 + 113549 0.69 0.827868
Target:  5'- cCGUGcGCGCGCUGGaccgcgagcaguGGUcgGUGGCCg -3'
miRNA:   3'- uGUACcUGCGCGACU------------UCAugCACCGG- -5'
23758 3' -54 NC_005261.1 + 118786 0.69 0.836358
Target:  5'- uGCAgacGGCGCGCUGAuGgcgcACGUGGgCg -3'
miRNA:   3'- -UGUac-CUGCGCGACUuCa---UGCACCgG- -5'
23758 3' -54 NC_005261.1 + 37246 0.69 0.836358
Target:  5'- cGCGUGGACaGCGC-GGAG-ACcauccUGGCCg -3'
miRNA:   3'- -UGUACCUG-CGCGaCUUCaUGc----ACCGG- -5'
23758 3' -54 NC_005261.1 + 14963 0.69 0.844656
Target:  5'- ---cGGGCGUGcCUGggGcgacUGCGcGGCCg -3'
miRNA:   3'- uguaCCUGCGC-GACuuC----AUGCaCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.