miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23758 3' -54 NC_005261.1 + 68094 0.68 0.896766
Target:  5'- gGCggGGAggccgugaaguuCGgGCUGGAGcUGCGcgGGCCg -3'
miRNA:   3'- -UGuaCCU------------GCgCGACUUC-AUGCa-CCGG- -5'
23758 3' -54 NC_005261.1 + 33897 0.68 0.895432
Target:  5'- cACcgGGGCGCGCguauaaaGCGgGGCCg -3'
miRNA:   3'- -UGuaCCUGCGCGacuuca-UGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 39783 0.68 0.890003
Target:  5'- ---aGGACGuCGCcgGggGgcgGCGcGGCCg -3'
miRNA:   3'- uguaCCUGC-GCGa-CuuCa--UGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 30214 0.68 0.890003
Target:  5'- ---cGGcCGCGCUGgcGgcgcgaacCGUGGCCc -3'
miRNA:   3'- uguaCCuGCGCGACuuCau------GCACCGG- -5'
23758 3' -54 NC_005261.1 + 75501 0.68 0.883004
Target:  5'- aGCGcGGG-GCGCUGGAGgcgcacgcCGUGGUCg -3'
miRNA:   3'- -UGUaCCUgCGCGACUUCau------GCACCGG- -5'
23758 3' -54 NC_005261.1 + 110610 0.67 0.915608
Target:  5'- gACGUGGACGCcgagcugcgGCUGGAGccCGccGGCg -3'
miRNA:   3'- -UGUACCUGCG---------CGACUUCauGCa-CCGg -5'
23758 3' -54 NC_005261.1 + 127334 0.67 0.915608
Target:  5'- cGCggGGGCcggagcggcgggGCGCUGGGcccGCGUGGCUa -3'
miRNA:   3'- -UGuaCCUG------------CGCGACUUca-UGCACCGG- -5'
23758 3' -54 NC_005261.1 + 135806 0.67 0.917954
Target:  5'- cCGUGGGCGaCGCgccguucgaGGAGUacaucccuggggcuuGCGUGGCg -3'
miRNA:   3'- uGUACCUGC-GCGa--------CUUCA---------------UGCACCGg -5'
23758 3' -54 NC_005261.1 + 67110 0.67 0.921398
Target:  5'- uGCggGcGGCGCGCgc-AGUGCGgcGGCCc -3'
miRNA:   3'- -UGuaC-CUGCGCGacuUCAUGCa-CCGG- -5'
23758 3' -54 NC_005261.1 + 81904 0.67 0.921398
Target:  5'- aGCAUGaACGCGgccagcuccuccUUGAGGUGCGggagcaGGCCc -3'
miRNA:   3'- -UGUACcUGCGC------------GACUUCAUGCa-----CCGG- -5'
23758 3' -54 NC_005261.1 + 67827 0.67 0.921398
Target:  5'- ---cGGGCGCGCgcagGAGGgcCGcacucuccgGGCCg -3'
miRNA:   3'- uguaCCUGCGCGa---CUUCauGCa--------CCGG- -5'
23758 3' -54 NC_005261.1 + 15283 0.67 0.915608
Target:  5'- cGCcgGGGCGCGC---GGU-CGcGGCCu -3'
miRNA:   3'- -UGuaCCUGCGCGacuUCAuGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 3413 0.67 0.915608
Target:  5'- ----cGGCGgGCUGAAGaGCGcgcgGGCCa -3'
miRNA:   3'- uguacCUGCgCGACUUCaUGCa---CCGG- -5'
23758 3' -54 NC_005261.1 + 71972 0.67 0.909571
Target:  5'- gGCGcGGAgCGCGCgGcAGGUGCGcagcgucgccccUGGCCu -3'
miRNA:   3'- -UGUaCCU-GCGCGaC-UUCAUGC------------ACCGG- -5'
23758 3' -54 NC_005261.1 + 16177 0.67 0.909571
Target:  5'- gGCGcGGGCGUgGCgGggGUggGCGggGGCCg -3'
miRNA:   3'- -UGUaCCUGCG-CGaCuuCA--UGCa-CCGG- -5'
23758 3' -54 NC_005261.1 + 64489 0.67 0.909571
Target:  5'- uGCAgcgGGugGCGCg--GGUGCucggGGCCc -3'
miRNA:   3'- -UGUa--CCugCGCGacuUCAUGca--CCGG- -5'
23758 3' -54 NC_005261.1 + 34907 0.67 0.909571
Target:  5'- ---cGGACGCGgaGGucGGgGCGcGGCCa -3'
miRNA:   3'- uguaCCUGCGCgaCU--UCaUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 34677 0.67 0.909571
Target:  5'- -uGUGGcaGCGCGCUGcgugACGgugGGCCc -3'
miRNA:   3'- ugUACC--UGCGCGACuucaUGCa--CCGG- -5'
23758 3' -54 NC_005261.1 + 121803 0.67 0.90329
Target:  5'- gGCAggGGGCGCgugGCUGGGcucUGCG-GGCCg -3'
miRNA:   3'- -UGUa-CCUGCG---CGACUUc--AUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 27365 0.67 0.921963
Target:  5'- ---cGGACcgGCGCgaggccggugggcagGggGUACGcGGCCa -3'
miRNA:   3'- uguaCCUG--CGCGa--------------CuuCAUGCaCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.