miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23758 3' -54 NC_005261.1 + 121803 0.67 0.90329
Target:  5'- gGCAggGGGCGCgugGCUGGGcucUGCG-GGCCg -3'
miRNA:   3'- -UGUa-CCUGCG---CGACUUc--AUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 34677 0.67 0.909571
Target:  5'- -uGUGGcaGCGCGCUGcgugACGgugGGCCc -3'
miRNA:   3'- ugUACC--UGCGCGACuucaUGCa--CCGG- -5'
23758 3' -54 NC_005261.1 + 34907 0.67 0.909571
Target:  5'- ---cGGACGCGgaGGucGGgGCGcGGCCa -3'
miRNA:   3'- uguaCCUGCGCgaCU--UCaUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 64489 0.67 0.909571
Target:  5'- uGCAgcgGGugGCGCg--GGUGCucggGGCCc -3'
miRNA:   3'- -UGUa--CCugCGCGacuUCAUGca--CCGG- -5'
23758 3' -54 NC_005261.1 + 16177 0.67 0.909571
Target:  5'- gGCGcGGGCGUgGCgGggGUggGCGggGGCCg -3'
miRNA:   3'- -UGUaCCUGCG-CGaCuuCA--UGCa-CCGG- -5'
23758 3' -54 NC_005261.1 + 71972 0.67 0.909571
Target:  5'- gGCGcGGAgCGCGCgGcAGGUGCGcagcgucgccccUGGCCu -3'
miRNA:   3'- -UGUaCCU-GCGCGaC-UUCAUGC------------ACCGG- -5'
23758 3' -54 NC_005261.1 + 3413 0.67 0.915608
Target:  5'- ----cGGCGgGCUGAAGaGCGcgcgGGCCa -3'
miRNA:   3'- uguacCUGCgCGACUUCaUGCa---CCGG- -5'
23758 3' -54 NC_005261.1 + 15283 0.67 0.915608
Target:  5'- cGCcgGGGCGCGC---GGU-CGcGGCCu -3'
miRNA:   3'- -UGuaCCUGCGCGacuUCAuGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 110610 0.67 0.915608
Target:  5'- gACGUGGACGCcgagcugcgGCUGGAGccCGccGGCg -3'
miRNA:   3'- -UGUACCUGCG---------CGACUUCauGCa-CCGg -5'
23758 3' -54 NC_005261.1 + 127334 0.67 0.915608
Target:  5'- cGCggGGGCcggagcggcgggGCGCUGGGcccGCGUGGCUa -3'
miRNA:   3'- -UGuaCCUG------------CGCGACUUca-UGCACCGG- -5'
23758 3' -54 NC_005261.1 + 47578 0.66 0.94619
Target:  5'- cGCAUGGcgcagagccgcgcGCGCGCgagGGAGccgcccccUGCGggggcGGCCg -3'
miRNA:   3'- -UGUACC-------------UGCGCGa--CUUC--------AUGCa----CCGG- -5'
23758 3' -54 NC_005261.1 + 44264 0.66 0.946634
Target:  5'- ---cGcGGCGCGCgGggGgGCGgGGCCc -3'
miRNA:   3'- uguaC-CUGCGCGaCuuCaUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 109121 0.66 0.946634
Target:  5'- ---aGGGCgGCGgUGucGUGCGcGGCCc -3'
miRNA:   3'- uguaCCUG-CGCgACuuCAUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 12327 0.66 0.946634
Target:  5'- ---cGGGCGCGCgcuuGGccgGCGcGGCCg -3'
miRNA:   3'- uguaCCUGCGCGacu-UCa--UGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 51351 0.66 0.94208
Target:  5'- uGCAccgcUGGGCuguccgGCGC-GGAGUACGcgcaGGCCg -3'
miRNA:   3'- -UGU----ACCUG------CGCGaCUUCAUGCa---CCGG- -5'
23758 3' -54 NC_005261.1 + 13679 0.66 0.94208
Target:  5'- gGCGcgGGGCGCGCgggcgUGggGcgggGCG-GGCUg -3'
miRNA:   3'- -UGUa-CCUGCGCG-----ACuuCa---UGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 5222 0.66 0.94208
Target:  5'- ---cGGACuCGaUGAGGUcguacaggucgaGCGUGGCCg -3'
miRNA:   3'- uguaCCUGcGCgACUUCA------------UGCACCGG- -5'
23758 3' -54 NC_005261.1 + 114355 0.66 0.93728
Target:  5'- cGCGUGGcCGCGgccGAGUcgGUGGCCg -3'
miRNA:   3'- -UGUACCuGCGCgacUUCAugCACCGG- -5'
23758 3' -54 NC_005261.1 + 75881 0.66 0.93728
Target:  5'- cCGUGGGCGCGCgc-AGcgGCGacGCCa -3'
miRNA:   3'- uGUACCUGCGCGacuUCa-UGCacCGG- -5'
23758 3' -54 NC_005261.1 + 109222 0.66 0.955018
Target:  5'- gGCGcGGcacgccGCGCGCUGcAgcgcggcccAGUGCGgGGCCa -3'
miRNA:   3'- -UGUaCC------UGCGCGAC-U---------UCAUGCaCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.