Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23758 | 3' | -54 | NC_005261.1 | + | 30214 | 0.68 | 0.890003 |
Target: 5'- ---cGGcCGCGCUGgcGgcgcgaacCGUGGCCc -3' miRNA: 3'- uguaCCuGCGCGACuuCau------GCACCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 39783 | 0.68 | 0.890003 |
Target: 5'- ---aGGACGuCGCcgGggGgcgGCGcGGCCg -3' miRNA: 3'- uguaCCUGC-GCGa-CuuCa--UGCaCCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 33897 | 0.68 | 0.895432 |
Target: 5'- cACcgGGGCGCGCguauaaaGCGgGGCCg -3' miRNA: 3'- -UGuaCCUGCGCGacuuca-UGCaCCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 68094 | 0.68 | 0.896766 |
Target: 5'- gGCggGGAggccgugaaguuCGgGCUGGAGcUGCGcgGGCCg -3' miRNA: 3'- -UGuaCCU------------GCgCGACUUC-AUGCa-CCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 111985 | 0.68 | 0.896766 |
Target: 5'- ---cGGG-GCGCUGGAGUccAUG-GGCCa -3' miRNA: 3'- uguaCCUgCGCGACUUCA--UGCaCCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 121803 | 0.67 | 0.90329 |
Target: 5'- gGCAggGGGCGCgugGCUGGGcucUGCG-GGCCg -3' miRNA: 3'- -UGUa-CCUGCG---CGACUUc--AUGCaCCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 33365 | 0.67 | 0.90329 |
Target: 5'- cGCcgGGcCGCGCcGGGcUGCG-GGCCg -3' miRNA: 3'- -UGuaCCuGCGCGaCUUcAUGCaCCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 34677 | 0.67 | 0.909571 |
Target: 5'- -uGUGGcaGCGCGCUGcgugACGgugGGCCc -3' miRNA: 3'- ugUACC--UGCGCGACuucaUGCa--CCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 34907 | 0.67 | 0.909571 |
Target: 5'- ---cGGACGCGgaGGucGGgGCGcGGCCa -3' miRNA: 3'- uguaCCUGCGCgaCU--UCaUGCaCCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 64489 | 0.67 | 0.909571 |
Target: 5'- uGCAgcgGGugGCGCg--GGUGCucggGGCCc -3' miRNA: 3'- -UGUa--CCugCGCGacuUCAUGca--CCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 16177 | 0.67 | 0.909571 |
Target: 5'- gGCGcGGGCGUgGCgGggGUggGCGggGGCCg -3' miRNA: 3'- -UGUaCCUGCG-CGaCuuCA--UGCa-CCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 71972 | 0.67 | 0.909571 |
Target: 5'- gGCGcGGAgCGCGCgGcAGGUGCGcagcgucgccccUGGCCu -3' miRNA: 3'- -UGUaCCU-GCGCGaC-UUCAUGC------------ACCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 127334 | 0.67 | 0.915608 |
Target: 5'- cGCggGGGCcggagcggcgggGCGCUGGGcccGCGUGGCUa -3' miRNA: 3'- -UGuaCCUG------------CGCGACUUca-UGCACCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 110610 | 0.67 | 0.915608 |
Target: 5'- gACGUGGACGCcgagcugcgGCUGGAGccCGccGGCg -3' miRNA: 3'- -UGUACCUGCG---------CGACUUCauGCa-CCGg -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 15283 | 0.67 | 0.915608 |
Target: 5'- cGCcgGGGCGCGC---GGU-CGcGGCCu -3' miRNA: 3'- -UGuaCCUGCGCGacuUCAuGCaCCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 3413 | 0.67 | 0.915608 |
Target: 5'- ----cGGCGgGCUGAAGaGCGcgcgGGCCa -3' miRNA: 3'- uguacCUGCgCGACUUCaUGCa---CCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 135806 | 0.67 | 0.917954 |
Target: 5'- cCGUGGGCGaCGCgccguucgaGGAGUacaucccuggggcuuGCGUGGCg -3' miRNA: 3'- uGUACCUGC-GCGa--------CUUCA---------------UGCACCGg -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 67110 | 0.67 | 0.921398 |
Target: 5'- uGCggGcGGCGCGCgc-AGUGCGgcGGCCc -3' miRNA: 3'- -UGuaC-CUGCGCGacuUCAUGCa-CCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 81904 | 0.67 | 0.921398 |
Target: 5'- aGCAUGaACGCGgccagcuccuccUUGAGGUGCGggagcaGGCCc -3' miRNA: 3'- -UGUACcUGCGC------------GACUUCAUGCa-----CCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 67827 | 0.67 | 0.921398 |
Target: 5'- ---cGGGCGCGCgcagGAGGgcCGcacucuccgGGCCg -3' miRNA: 3'- uguaCCUGCGCGa---CUUCauGCa--------CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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