miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23758 3' -54 NC_005261.1 + 27365 0.67 0.921963
Target:  5'- ---cGGACcgGCGCgaggccggugggcagGggGUACGcGGCCa -3'
miRNA:   3'- uguaCCUG--CGCGa--------------CuuCAUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 94684 0.67 0.92694
Target:  5'- ----uGAgGCGCUGGccaccgAGgACGUGGCCg -3'
miRNA:   3'- uguacCUgCGCGACU------UCaUGCACCGG- -5'
23758 3' -54 NC_005261.1 + 37873 0.67 0.92694
Target:  5'- cGCcUGGcggcGCGUGCUGGAGccCGagcUGGCCa -3'
miRNA:   3'- -UGuACC----UGCGCGACUUCauGC---ACCGG- -5'
23758 3' -54 NC_005261.1 + 101569 0.67 0.92694
Target:  5'- ---aGGAUGCGCUcGgcGcgcgcCGUGGCCu -3'
miRNA:   3'- uguaCCUGCGCGA-CuuCau---GCACCGG- -5'
23758 3' -54 NC_005261.1 + 49361 0.67 0.92694
Target:  5'- cGCGUGGAgGaUGUUGAGGcugucgcucGCGcUGGCCa -3'
miRNA:   3'- -UGUACCUgC-GCGACUUCa--------UGC-ACCGG- -5'
23758 3' -54 NC_005261.1 + 54329 0.67 0.932234
Target:  5'- gGCGUGGccgaGCGCGUacAGGU-CGaUGGCCa -3'
miRNA:   3'- -UGUACC----UGCGCGacUUCAuGC-ACCGG- -5'
23758 3' -54 NC_005261.1 + 76242 0.67 0.932234
Target:  5'- gACGcGG-CGC-CUGAgccAGUucaACGUGGCCa -3'
miRNA:   3'- -UGUaCCuGCGcGACU---UCA---UGCACCGG- -5'
23758 3' -54 NC_005261.1 + 118893 0.67 0.932234
Target:  5'- ---cGGGCGCGCUG------GUGGCCu -3'
miRNA:   3'- uguaCCUGCGCGACuucaugCACCGG- -5'
23758 3' -54 NC_005261.1 + 15996 0.67 0.932234
Target:  5'- cCcgGGcaGCGCGCUGuAGUugACGUuGCCg -3'
miRNA:   3'- uGuaCC--UGCGCGACuUCA--UGCAcCGG- -5'
23758 3' -54 NC_005261.1 + 70987 0.67 0.932234
Target:  5'- cGCGUGG-CGCGCgGgcGgcCGccaGGCCa -3'
miRNA:   3'- -UGUACCuGCGCGaCuuCauGCa--CCGG- -5'
23758 3' -54 NC_005261.1 + 114355 0.66 0.93728
Target:  5'- cGCGUGGcCGCGgccGAGUcgGUGGCCg -3'
miRNA:   3'- -UGUACCuGCGCgacUUCAugCACCGG- -5'
23758 3' -54 NC_005261.1 + 75881 0.66 0.93728
Target:  5'- cCGUGGGCGCGCgc-AGcgGCGacGCCa -3'
miRNA:   3'- uGUACCUGCGCGacuUCa-UGCacCGG- -5'
23758 3' -54 NC_005261.1 + 29462 0.66 0.93728
Target:  5'- ---gGGACGCGggGAagcAGUACGcGGCg -3'
miRNA:   3'- uguaCCUGCGCgaCU---UCAUGCaCCGg -5'
23758 3' -54 NC_005261.1 + 5222 0.66 0.94208
Target:  5'- ---cGGACuCGaUGAGGUcguacaggucgaGCGUGGCCg -3'
miRNA:   3'- uguaCCUGcGCgACUUCA------------UGCACCGG- -5'
23758 3' -54 NC_005261.1 + 13679 0.66 0.94208
Target:  5'- gGCGcgGGGCGCGCgggcgUGggGcgggGCG-GGCUg -3'
miRNA:   3'- -UGUa-CCUGCGCG-----ACuuCa---UGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 51351 0.66 0.94208
Target:  5'- uGCAccgcUGGGCuguccgGCGC-GGAGUACGcgcaGGCCg -3'
miRNA:   3'- -UGU----ACCUG------CGCGaCUUCAUGCa---CCGG- -5'
23758 3' -54 NC_005261.1 + 47578 0.66 0.94619
Target:  5'- cGCAUGGcgcagagccgcgcGCGCGCgagGGAGccgcccccUGCGggggcGGCCg -3'
miRNA:   3'- -UGUACC-------------UGCGCGa--CUUC--------AUGCa----CCGG- -5'
23758 3' -54 NC_005261.1 + 109121 0.66 0.946634
Target:  5'- ---aGGGCgGCGgUGucGUGCGcGGCCc -3'
miRNA:   3'- uguaCCUG-CGCgACuuCAUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 12327 0.66 0.946634
Target:  5'- ---cGGGCGCGCgcuuGGccgGCGcGGCCg -3'
miRNA:   3'- uguaCCUGCGCGacu-UCa--UGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 53870 0.66 0.946634
Target:  5'- aGCGcGGcgcGCGCGCUGucGAGUcgaaGCG-GGCCc -3'
miRNA:   3'- -UGUaCC---UGCGCGAC--UUCA----UGCaCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.