miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23758 3' -54 NC_005261.1 + 56476 0.76 0.454538
Target:  5'- uCAUGGAgGCGCUGGAGUcuaugcgcgccucagGCGcguuugcgcaagUGGCCg -3'
miRNA:   3'- uGUACCUgCGCGACUUCA---------------UGC------------ACCGG- -5'
23758 3' -54 NC_005261.1 + 58867 0.71 0.754027
Target:  5'- -aGUGGAaGCGCUGggGagguccggGCG-GGCCu -3'
miRNA:   3'- ugUACCUgCGCGACuuCa-------UGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 61570 0.7 0.801322
Target:  5'- -gAUGGugGCGCU--GGUGa-UGGCCg -3'
miRNA:   3'- ugUACCugCGCGAcuUCAUgcACCGG- -5'
23758 3' -54 NC_005261.1 + 64489 0.67 0.909571
Target:  5'- uGCAgcgGGugGCGCg--GGUGCucggGGCCc -3'
miRNA:   3'- -UGUa--CCugCGCGacuUCAUGca--CCGG- -5'
23758 3' -54 NC_005261.1 + 67110 0.67 0.921398
Target:  5'- uGCggGcGGCGCGCgc-AGUGCGgcGGCCc -3'
miRNA:   3'- -UGuaC-CUGCGCGacuUCAUGCa-CCGG- -5'
23758 3' -54 NC_005261.1 + 67827 0.67 0.921398
Target:  5'- ---cGGGCGCGCgcagGAGGgcCGcacucuccgGGCCg -3'
miRNA:   3'- uguaCCUGCGCGa---CUUCauGCa--------CCGG- -5'
23758 3' -54 NC_005261.1 + 68094 0.68 0.896766
Target:  5'- gGCggGGAggccgugaaguuCGgGCUGGAGcUGCGcgGGCCg -3'
miRNA:   3'- -UGuaCCU------------GCgCGACUUC-AUGCa-CCGG- -5'
23758 3' -54 NC_005261.1 + 68493 0.66 0.950946
Target:  5'- aACcgGGAgugcuuCGCGCUGAugcagGCGUGccuGCCg -3'
miRNA:   3'- -UGuaCCU------GCGCGACUuca--UGCAC---CGG- -5'
23758 3' -54 NC_005261.1 + 69225 0.66 0.954223
Target:  5'- aGC-UGuGCGCGCUGggGcgguucgccgagGCGcUGGCCc -3'
miRNA:   3'- -UGuACcUGCGCGACuuCa-----------UGC-ACCGG- -5'
23758 3' -54 NC_005261.1 + 69449 0.66 0.955018
Target:  5'- aGCGcGGACGaGCUGcGGcGCGUcgagGGCCa -3'
miRNA:   3'- -UGUaCCUGCgCGACuUCaUGCA----CCGG- -5'
23758 3' -54 NC_005261.1 + 69538 0.72 0.673065
Target:  5'- gGCGcUGGcgcGCGCGCUGggG-ACGgcGGCCc -3'
miRNA:   3'- -UGU-ACC---UGCGCGACuuCaUGCa-CCGG- -5'
23758 3' -54 NC_005261.1 + 70987 0.67 0.932234
Target:  5'- cGCGUGG-CGCGCgGgcGgcCGccaGGCCa -3'
miRNA:   3'- -UGUACCuGCGCGaCuuCauGCa--CCGG- -5'
23758 3' -54 NC_005261.1 + 71972 0.67 0.909571
Target:  5'- gGCGcGGAgCGCGCgGcAGGUGCGcagcgucgccccUGGCCu -3'
miRNA:   3'- -UGUaCCU-GCGCGaC-UUCAUGC------------ACCGG- -5'
23758 3' -54 NC_005261.1 + 75501 0.68 0.883004
Target:  5'- aGCGcGGG-GCGCUGGAGgcgcacgcCGUGGUCg -3'
miRNA:   3'- -UGUaCCUgCGCGACUUCau------GCACCGG- -5'
23758 3' -54 NC_005261.1 + 75881 0.66 0.93728
Target:  5'- cCGUGGGCGCGCgc-AGcgGCGacGCCa -3'
miRNA:   3'- uGUACCUGCGCGacuUCa-UGCacCGG- -5'
23758 3' -54 NC_005261.1 + 76165 0.72 0.703947
Target:  5'- gACGccGugGCGCUGcAGUACGagcggGGCCu -3'
miRNA:   3'- -UGUacCugCGCGACuUCAUGCa----CCGG- -5'
23758 3' -54 NC_005261.1 + 76242 0.67 0.932234
Target:  5'- gACGcGG-CGC-CUGAgccAGUucaACGUGGCCa -3'
miRNA:   3'- -UGUaCCuGCGcGACU---UCA---UGCACCGG- -5'
23758 3' -54 NC_005261.1 + 79891 0.7 0.795833
Target:  5'- cACA-GGGCGCGCUccuuguuuugcagcaGGcaccAGgACGUGGCCa -3'
miRNA:   3'- -UGUaCCUGCGCGA---------------CU----UCaUGCACCGG- -5'
23758 3' -54 NC_005261.1 + 81904 0.67 0.921398
Target:  5'- aGCAUGaACGCGgccagcuccuccUUGAGGUGCGggagcaGGCCc -3'
miRNA:   3'- -UGUACcUGCGC------------GACUUCAUGCa-----CCGG- -5'
23758 3' -54 NC_005261.1 + 85942 0.7 0.801322
Target:  5'- gGCGgccaGGGCGcCGCgGAAGcugGCGUGGUCc -3'
miRNA:   3'- -UGUa---CCUGC-GCGaCUUCa--UGCACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.