miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23758 3' -54 NC_005261.1 + 110610 0.67 0.915608
Target:  5'- gACGUGGACGCcgagcugcgGCUGGAGccCGccGGCg -3'
miRNA:   3'- -UGUACCUGCG---------CGACUUCauGCa-CCGg -5'
23758 3' -54 NC_005261.1 + 110466 0.66 0.955018
Target:  5'- uGCcUGGGCGgGCUGcucu-CGUGGaCCa -3'
miRNA:   3'- -UGuACCUGCgCGACuucauGCACC-GG- -5'
23758 3' -54 NC_005261.1 + 110238 0.73 0.641871
Target:  5'- aGCGUGGGCgGCGCggcgcccggGggGcUGCG-GGCCu -3'
miRNA:   3'- -UGUACCUG-CGCGa--------CuuC-AUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 109222 0.66 0.955018
Target:  5'- gGCGcGGcacgccGCGCGCUGcAgcgcggcccAGUGCGgGGCCa -3'
miRNA:   3'- -UGUaCC------UGCGCGAC-U---------UCAUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 109121 0.66 0.946634
Target:  5'- ---aGGGCgGCGgUGucGUGCGcGGCCc -3'
miRNA:   3'- uguaCCUG-CGCgACuuCAUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 108570 0.69 0.844656
Target:  5'- uCGUGcGACGUGCgcgcGAAG-GCGuUGGCCu -3'
miRNA:   3'- uGUAC-CUGCGCGa---CUUCaUGC-ACCGG- -5'
23758 3' -54 NC_005261.1 + 101569 0.67 0.92694
Target:  5'- ---aGGAUGCGCUcGgcGcgcgcCGUGGCCu -3'
miRNA:   3'- uguaCCUGCGCGA-CuuCau---GCACCGG- -5'
23758 3' -54 NC_005261.1 + 94684 0.67 0.92694
Target:  5'- ----uGAgGCGCUGGccaccgAGgACGUGGCCg -3'
miRNA:   3'- uguacCUgCGCGACU------UCaUGCACCGG- -5'
23758 3' -54 NC_005261.1 + 93431 0.71 0.754027
Target:  5'- ---cGcGAUGUGCuUGAGGgcCGUGGCCa -3'
miRNA:   3'- uguaC-CUGCGCG-ACUUCauGCACCGG- -5'
23758 3' -54 NC_005261.1 + 89096 0.77 0.396838
Target:  5'- gGCccGGGCGCGCUGgcGcgcGCGUGGCa -3'
miRNA:   3'- -UGuaCCUGCGCGACuuCa--UGCACCGg -5'
23758 3' -54 NC_005261.1 + 85942 0.7 0.801322
Target:  5'- gGCGgccaGGGCGcCGCgGAAGcugGCGUGGUCc -3'
miRNA:   3'- -UGUa---CCUGC-GCGaCUUCa--UGCACCGG- -5'
23758 3' -54 NC_005261.1 + 81904 0.67 0.921398
Target:  5'- aGCAUGaACGCGgccagcuccuccUUGAGGUGCGggagcaGGCCc -3'
miRNA:   3'- -UGUACcUGCGC------------GACUUCAUGCa-----CCGG- -5'
23758 3' -54 NC_005261.1 + 79891 0.7 0.795833
Target:  5'- cACA-GGGCGCGCUccuuguuuugcagcaGGcaccAGgACGUGGCCa -3'
miRNA:   3'- -UGUaCCUGCGCGA---------------CU----UCaUGCACCGG- -5'
23758 3' -54 NC_005261.1 + 76242 0.67 0.932234
Target:  5'- gACGcGG-CGC-CUGAgccAGUucaACGUGGCCa -3'
miRNA:   3'- -UGUaCCuGCGcGACU---UCA---UGCACCGG- -5'
23758 3' -54 NC_005261.1 + 76165 0.72 0.703947
Target:  5'- gACGccGugGCGCUGcAGUACGagcggGGCCu -3'
miRNA:   3'- -UGUacCugCGCGACuUCAUGCa----CCGG- -5'
23758 3' -54 NC_005261.1 + 75881 0.66 0.93728
Target:  5'- cCGUGGGCGCGCgc-AGcgGCGacGCCa -3'
miRNA:   3'- uGUACCUGCGCGacuUCa-UGCacCGG- -5'
23758 3' -54 NC_005261.1 + 75501 0.68 0.883004
Target:  5'- aGCGcGGG-GCGCUGGAGgcgcacgcCGUGGUCg -3'
miRNA:   3'- -UGUaCCUgCGCGACUUCau------GCACCGG- -5'
23758 3' -54 NC_005261.1 + 71972 0.67 0.909571
Target:  5'- gGCGcGGAgCGCGCgGcAGGUGCGcagcgucgccccUGGCCu -3'
miRNA:   3'- -UGUaCCU-GCGCGaC-UUCAUGC------------ACCGG- -5'
23758 3' -54 NC_005261.1 + 70987 0.67 0.932234
Target:  5'- cGCGUGG-CGCGCgGgcGgcCGccaGGCCa -3'
miRNA:   3'- -UGUACCuGCGCGaCuuCauGCa--CCGG- -5'
23758 3' -54 NC_005261.1 + 69538 0.72 0.673065
Target:  5'- gGCGcUGGcgcGCGCGCUGggG-ACGgcGGCCc -3'
miRNA:   3'- -UGU-ACC---UGCGCGACuuCaUGCa-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.