Results 61 - 80 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23758 | 3' | -54 | NC_005261.1 | + | 47073 | 0.7 | 0.801322 |
Target: 5'- cGCGUGGuACGCGUgcacgccGAAG-GCG-GGCCa -3' miRNA: 3'- -UGUACC-UGCGCGa------CUUCaUGCaCCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 45465 | 0.74 | 0.589829 |
Target: 5'- uACGUGGGCGCcacgcgcguGCUGAAcacggccauGUGCaUGGCCg -3' miRNA: 3'- -UGUACCUGCG---------CGACUU---------CAUGcACCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 45120 | 0.73 | 0.652289 |
Target: 5'- gGCAcGGGCGCGCUGAugcugACGcucgacGGCCg -3' miRNA: 3'- -UGUaCCUGCGCGACUuca--UGCa-----CCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 44965 | 0.72 | 0.673065 |
Target: 5'- uGCG-GGACGCGCgcGAGGgcccggGCG-GGCCg -3' miRNA: 3'- -UGUaCCUGCGCGa-CUUCa-----UGCaCCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 44264 | 0.66 | 0.946634 |
Target: 5'- ---cGcGGCGCGCgGggGgGCGgGGCCc -3' miRNA: 3'- uguaC-CUGCGCGaCuuCaUGCaCCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 43453 | 0.7 | 0.801322 |
Target: 5'- cGCcUGGACGUcgccgggcggguGCUGGcggAGUGCGaGGCCu -3' miRNA: 3'- -UGuACCUGCG------------CGACU---UCAUGCaCCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 39783 | 0.68 | 0.890003 |
Target: 5'- ---aGGACGuCGCcgGggGgcgGCGcGGCCg -3' miRNA: 3'- uguaCCUGC-GCGa-CuuCa--UGCaCCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 37989 | 0.75 | 0.538571 |
Target: 5'- cGCGUGGACGCGCUacgcggcgcccGAGG-ACGUcaaGGUCg -3' miRNA: 3'- -UGUACCUGCGCGA-----------CUUCaUGCA---CCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 37873 | 0.67 | 0.92694 |
Target: 5'- cGCcUGGcggcGCGUGCUGGAGccCGagcUGGCCa -3' miRNA: 3'- -UGuACC----UGCGCGACUUCauGC---ACCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 37246 | 0.69 | 0.836358 |
Target: 5'- cGCGUGGACaGCGC-GGAG-ACcauccUGGCCg -3' miRNA: 3'- -UGUACCUG-CGCGaCUUCaUGc----ACCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 34907 | 0.67 | 0.909571 |
Target: 5'- ---cGGACGCGgaGGucGGgGCGcGGCCa -3' miRNA: 3'- uguaCCUGCGCgaCU--UCaUGCaCCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 34677 | 0.67 | 0.909571 |
Target: 5'- -uGUGGcaGCGCGCUGcgugACGgugGGCCc -3' miRNA: 3'- ugUACC--UGCGCGACuucaUGCa--CCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 33897 | 0.68 | 0.895432 |
Target: 5'- cACcgGGGCGCGCguauaaaGCGgGGCCg -3' miRNA: 3'- -UGuaCCUGCGCGacuuca-UGCaCCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 33365 | 0.67 | 0.90329 |
Target: 5'- cGCcgGGcCGCGCcGGGcUGCG-GGCCg -3' miRNA: 3'- -UGuaCCuGCGCGaCUUcAUGCaCCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 32912 | 0.69 | 0.836358 |
Target: 5'- ---gGGGCGCGCgUGggGgGCGgcgGGCg -3' miRNA: 3'- uguaCCUGCGCG-ACuuCaUGCa--CCGg -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 30214 | 0.68 | 0.890003 |
Target: 5'- ---cGGcCGCGCUGgcGgcgcgaacCGUGGCCc -3' miRNA: 3'- uguaCCuGCGCGACuuCau------GCACCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 29684 | 0.69 | 0.852753 |
Target: 5'- -uGUGGGCGCuGCcgcacgUGgcGgccUGCGUGGCCa -3' miRNA: 3'- ugUACCUGCG-CG------ACuuC---AUGCACCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 29462 | 0.66 | 0.93728 |
Target: 5'- ---gGGACGCGggGAagcAGUACGcGGCg -3' miRNA: 3'- uguaCCUGCGCgaCU---UCAUGCaCCGg -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 28836 | 0.69 | 0.836358 |
Target: 5'- ---cGGcCGCgGCUGAGGcggccguCGUGGCCg -3' miRNA: 3'- uguaCCuGCG-CGACUUCau-----GCACCGG- -5' |
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23758 | 3' | -54 | NC_005261.1 | + | 28631 | 0.73 | 0.631445 |
Target: 5'- cGCAUGGugGcCGCgggGGAGagugACGaGGCCg -3' miRNA: 3'- -UGUACCugC-GCGa--CUUCa---UGCaCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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