miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23758 3' -54 NC_005261.1 + 135496 0.75 0.548718
Target:  5'- -gAUGGACGCGCUGGccucagccgacgAGUgccugACGUGGUg -3'
miRNA:   3'- ugUACCUGCGCGACU------------UCA-----UGCACCGg -5'
23758 3' -54 NC_005261.1 + 37989 0.75 0.538571
Target:  5'- cGCGUGGACGCGCUacgcggcgcccGAGG-ACGUcaaGGUCg -3'
miRNA:   3'- -UGUACCUGCGCGA-----------CUUCaUGCA---CCGG- -5'
23758 3' -54 NC_005261.1 + 56476 0.76 0.454538
Target:  5'- uCAUGGAgGCGCUGGAGUcuaugcgcgccucagGCGcguuugcgcaagUGGCCg -3'
miRNA:   3'- uGUACCUgCGCGACUUCA---------------UGC------------ACCGG- -5'
23758 3' -54 NC_005261.1 + 119570 0.77 0.440602
Target:  5'- -aGUGGAUGCGCUGcgagcgcGAGacCGUGGCCg -3'
miRNA:   3'- ugUACCUGCGCGAC-------UUCauGCACCGG- -5'
23758 3' -54 NC_005261.1 + 89096 0.77 0.396838
Target:  5'- gGCccGGGCGCGCUGgcGcgcGCGUGGCa -3'
miRNA:   3'- -UGuaCCUGCGCGACuuCa--UGCACCGg -5'
23758 3' -54 NC_005261.1 + 76165 0.72 0.703947
Target:  5'- gACGccGugGCGCUGcAGUACGagcggGGCCu -3'
miRNA:   3'- -UGUacCugCGCGACuUCAUGCa----CCGG- -5'
23758 3' -54 NC_005261.1 + 136607 0.71 0.734261
Target:  5'- aGCGUGGagcggcgcgcGCGCGCcGAGGgcgGCGggaaGGCCu -3'
miRNA:   3'- -UGUACC----------UGCGCGaCUUCa--UGCa---CCGG- -5'
23758 3' -54 NC_005261.1 + 113549 0.69 0.827868
Target:  5'- cCGUGcGCGCGCUGGaccgcgagcaguGGUcgGUGGCCg -3'
miRNA:   3'- uGUACcUGCGCGACU------------UCAugCACCGG- -5'
23758 3' -54 NC_005261.1 + 123164 0.7 0.819193
Target:  5'- gGCGgggcGGGCGCGCgGgcGUG-GUGGCUg -3'
miRNA:   3'- -UGUa---CCUGCGCGaCuuCAUgCACCGG- -5'
23758 3' -54 NC_005261.1 + 115837 0.7 0.810341
Target:  5'- aGCuUGGGCGCGUUGGcccGCGcGGCCc -3'
miRNA:   3'- -UGuACCUGCGCGACUucaUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 85942 0.7 0.801322
Target:  5'- gGCGgccaGGGCGcCGCgGAAGcugGCGUGGUCc -3'
miRNA:   3'- -UGUa---CCUGC-GCGaCUUCa--UGCACCGG- -5'
23758 3' -54 NC_005261.1 + 47073 0.7 0.801322
Target:  5'- cGCGUGGuACGCGUgcacgccGAAG-GCG-GGCCa -3'
miRNA:   3'- -UGUACC-UGCGCGa------CUUCaUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 43453 0.7 0.801322
Target:  5'- cGCcUGGACGUcgccgggcggguGCUGGcggAGUGCGaGGCCu -3'
miRNA:   3'- -UGuACCUGCG------------CGACU---UCAUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 61570 0.7 0.801322
Target:  5'- -gAUGGugGCGCU--GGUGa-UGGCCg -3'
miRNA:   3'- ugUACCugCGCGAcuUCAUgcACCGG- -5'
23758 3' -54 NC_005261.1 + 79891 0.7 0.795833
Target:  5'- cACA-GGGCGCGCUccuuguuuugcagcaGGcaccAGgACGUGGCCa -3'
miRNA:   3'- -UGUaCCUGCGCGA---------------CU----UCaUGCACCGG- -5'
23758 3' -54 NC_005261.1 + 111936 0.7 0.792143
Target:  5'- uGCAgucg-GCGCUGAAGUACGaggagauguaccUGGCCa -3'
miRNA:   3'- -UGUaccugCGCGACUUCAUGC------------ACCGG- -5'
23758 3' -54 NC_005261.1 + 55293 0.7 0.773347
Target:  5'- ---cGGGgGCGCUGAagagccGGUGCGgggGGUCa -3'
miRNA:   3'- uguaCCUgCGCGACU------UCAUGCa--CCGG- -5'
23758 3' -54 NC_005261.1 + 131213 0.71 0.754027
Target:  5'- ----cGGCGCGCccgcGUACGUGGCCg -3'
miRNA:   3'- uguacCUGCGCGacuuCAUGCACCGG- -5'
23758 3' -54 NC_005261.1 + 58867 0.71 0.754027
Target:  5'- -aGUGGAaGCGCUGggGagguccggGCG-GGCCu -3'
miRNA:   3'- ugUACCUgCGCGACuuCa-------UGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 93431 0.71 0.754027
Target:  5'- ---cGcGAUGUGCuUGAGGgcCGUGGCCa -3'
miRNA:   3'- uguaC-CUGCGCG-ACUUCauGCACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.