Results 81 - 90 of 90 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23758 | 3' | -54 | NC_005261.1 | + | 47073 | 0.7 | 0.801322 |
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Target: 5'- cGCGUGGuACGCGUgcacgccGAAG-GCG-GGCCa -3' miRNA: 3'- -UGUACC-UGCGCGa------CUUCaUGCaCCGG- -5' |
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| 23758 | 3' | -54 | NC_005261.1 | + | 85942 | 0.7 | 0.801322 |
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Target: 5'- gGCGgccaGGGCGcCGCgGAAGcugGCGUGGUCc -3' miRNA: 3'- -UGUa---CCUGC-GCGaCUUCa--UGCACCGG- -5' |
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| 23758 | 3' | -54 | NC_005261.1 | + | 115837 | 0.7 | 0.810341 |
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Target: 5'- aGCuUGGGCGCGUUGGcccGCGcGGCCc -3' miRNA: 3'- -UGuACCUGCGCGACUucaUGCaCCGG- -5' |
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| 23758 | 3' | -54 | NC_005261.1 | + | 123164 | 0.7 | 0.819193 |
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Target: 5'- gGCGgggcGGGCGCGCgGgcGUG-GUGGCUg -3' miRNA: 3'- -UGUa---CCUGCGCGaCuuCAUgCACCGG- -5' |
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| 23758 | 3' | -54 | NC_005261.1 | + | 113549 | 0.69 | 0.827868 |
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Target: 5'- cCGUGcGCGCGCUGGaccgcgagcaguGGUcgGUGGCCg -3' miRNA: 3'- uGUACcUGCGCGACU------------UCAugCACCGG- -5' |
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| 23758 | 3' | -54 | NC_005261.1 | + | 118786 | 0.69 | 0.836358 |
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Target: 5'- uGCAgacGGCGCGCUGAuGgcgcACGUGGgCg -3' miRNA: 3'- -UGUac-CUGCGCGACUuCa---UGCACCgG- -5' |
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| 23758 | 3' | -54 | NC_005261.1 | + | 28836 | 0.69 | 0.836358 |
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Target: 5'- ---cGGcCGCgGCUGAGGcggccguCGUGGCCg -3' miRNA: 3'- uguaCCuGCG-CGACUUCau-----GCACCGG- -5' |
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| 23758 | 3' | -54 | NC_005261.1 | + | 32912 | 0.69 | 0.836358 |
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Target: 5'- ---gGGGCGCGCgUGggGgGCGgcgGGCg -3' miRNA: 3'- uguaCCUGCGCG-ACuuCaUGCa--CCGg -5' |
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| 23758 | 3' | -54 | NC_005261.1 | + | 37246 | 0.69 | 0.836358 |
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Target: 5'- cGCGUGGACaGCGC-GGAG-ACcauccUGGCCg -3' miRNA: 3'- -UGUACCUG-CGCGaCUUCaUGc----ACCGG- -5' |
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| 23758 | 3' | -54 | NC_005261.1 | + | 111985 | 0.68 | 0.896766 |
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Target: 5'- ---cGGG-GCGCUGGAGUccAUG-GGCCa -3' miRNA: 3'- uguaCCUgCGCGACUUCA--UGCaCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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