miRNA display CGI


Results 21 - 40 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23758 3' -54 NC_005261.1 + 70987 0.67 0.932234
Target:  5'- cGCGUGG-CGCGCgGgcGgcCGccaGGCCa -3'
miRNA:   3'- -UGUACCuGCGCGaCuuCauGCa--CCGG- -5'
23758 3' -54 NC_005261.1 + 15996 0.67 0.932234
Target:  5'- cCcgGGcaGCGCGCUGuAGUugACGUuGCCg -3'
miRNA:   3'- uGuaCC--UGCGCGACuUCA--UGCAcCGG- -5'
23758 3' -54 NC_005261.1 + 118893 0.67 0.932234
Target:  5'- ---cGGGCGCGCUG------GUGGCCu -3'
miRNA:   3'- uguaCCUGCGCGACuucaugCACCGG- -5'
23758 3' -54 NC_005261.1 + 54329 0.67 0.932234
Target:  5'- gGCGUGGccgaGCGCGUacAGGU-CGaUGGCCa -3'
miRNA:   3'- -UGUACC----UGCGCGacUUCAuGC-ACCGG- -5'
23758 3' -54 NC_005261.1 + 76242 0.67 0.932234
Target:  5'- gACGcGG-CGC-CUGAgccAGUucaACGUGGCCa -3'
miRNA:   3'- -UGUaCCuGCGcGACU---UCA---UGCACCGG- -5'
23758 3' -54 NC_005261.1 + 94684 0.67 0.92694
Target:  5'- ----uGAgGCGCUGGccaccgAGgACGUGGCCg -3'
miRNA:   3'- uguacCUgCGCGACU------UCaUGCACCGG- -5'
23758 3' -54 NC_005261.1 + 49361 0.67 0.92694
Target:  5'- cGCGUGGAgGaUGUUGAGGcugucgcucGCGcUGGCCa -3'
miRNA:   3'- -UGUACCUgC-GCGACUUCa--------UGC-ACCGG- -5'
23758 3' -54 NC_005261.1 + 37873 0.67 0.92694
Target:  5'- cGCcUGGcggcGCGUGCUGGAGccCGagcUGGCCa -3'
miRNA:   3'- -UGuACC----UGCGCGACUUCauGC---ACCGG- -5'
23758 3' -54 NC_005261.1 + 101569 0.67 0.92694
Target:  5'- ---aGGAUGCGCUcGgcGcgcgcCGUGGCCu -3'
miRNA:   3'- uguaCCUGCGCGA-CuuCau---GCACCGG- -5'
23758 3' -54 NC_005261.1 + 27365 0.67 0.921963
Target:  5'- ---cGGACcgGCGCgaggccggugggcagGggGUACGcGGCCa -3'
miRNA:   3'- uguaCCUG--CGCGa--------------CuuCAUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 67110 0.67 0.921398
Target:  5'- uGCggGcGGCGCGCgc-AGUGCGgcGGCCc -3'
miRNA:   3'- -UGuaC-CUGCGCGacuUCAUGCa-CCGG- -5'
23758 3' -54 NC_005261.1 + 81904 0.67 0.921398
Target:  5'- aGCAUGaACGCGgccagcuccuccUUGAGGUGCGggagcaGGCCc -3'
miRNA:   3'- -UGUACcUGCGC------------GACUUCAUGCa-----CCGG- -5'
23758 3' -54 NC_005261.1 + 67827 0.67 0.921398
Target:  5'- ---cGGGCGCGCgcagGAGGgcCGcacucuccgGGCCg -3'
miRNA:   3'- uguaCCUGCGCGa---CUUCauGCa--------CCGG- -5'
23758 3' -54 NC_005261.1 + 135806 0.67 0.917954
Target:  5'- cCGUGGGCGaCGCgccguucgaGGAGUacaucccuggggcuuGCGUGGCg -3'
miRNA:   3'- uGUACCUGC-GCGa--------CUUCA---------------UGCACCGg -5'
23758 3' -54 NC_005261.1 + 15283 0.67 0.915608
Target:  5'- cGCcgGGGCGCGC---GGU-CGcGGCCu -3'
miRNA:   3'- -UGuaCCUGCGCGacuUCAuGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 110610 0.67 0.915608
Target:  5'- gACGUGGACGCcgagcugcgGCUGGAGccCGccGGCg -3'
miRNA:   3'- -UGUACCUGCG---------CGACUUCauGCa-CCGg -5'
23758 3' -54 NC_005261.1 + 3413 0.67 0.915608
Target:  5'- ----cGGCGgGCUGAAGaGCGcgcgGGCCa -3'
miRNA:   3'- uguacCUGCgCGACUUCaUGCa---CCGG- -5'
23758 3' -54 NC_005261.1 + 127334 0.67 0.915608
Target:  5'- cGCggGGGCcggagcggcgggGCGCUGGGcccGCGUGGCUa -3'
miRNA:   3'- -UGuaCCUG------------CGCGACUUca-UGCACCGG- -5'
23758 3' -54 NC_005261.1 + 71972 0.67 0.909571
Target:  5'- gGCGcGGAgCGCGCgGcAGGUGCGcagcgucgccccUGGCCu -3'
miRNA:   3'- -UGUaCCU-GCGCGaC-UUCAUGC------------ACCGG- -5'
23758 3' -54 NC_005261.1 + 64489 0.67 0.909571
Target:  5'- uGCAgcgGGugGCGCg--GGUGCucggGGCCc -3'
miRNA:   3'- -UGUa--CCugCGCGacuUCAUGca--CCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.