Results 41 - 60 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23758 | 5' | -62.6 | NC_005261.1 | + | 2627 | 0.69 | 0.391124 |
Target: 5'- cGGGCGGCaugggGCCCagcacGCGGGCgg-GCa -3' miRNA: 3'- uCCCGCUGca---CGGGa----CGCCCGacaCG- -5' |
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23758 | 5' | -62.6 | NC_005261.1 | + | 611 | 0.69 | 0.399304 |
Target: 5'- gAGGGCGA-GUGCCCgacGCaGGGgaUGUGg -3' miRNA: 3'- -UCCCGCUgCACGGGa--CG-CCCg-ACACg -5' |
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23758 | 5' | -62.6 | NC_005261.1 | + | 30875 | 0.69 | 0.399304 |
Target: 5'- gGGGGcCGcCG-GCCCUGCcgcccgagcucGGGCUGggGCc -3' miRNA: 3'- -UCCC-GCuGCaCGGGACG-----------CCCGACa-CG- -5' |
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23758 | 5' | -62.6 | NC_005261.1 | + | 98475 | 0.69 | 0.399304 |
Target: 5'- cGGGCGGCc-GUCCUccGCGGGCUcgggcggguaagGUGCc -3' miRNA: 3'- uCCCGCUGcaCGGGA--CGCCCGA------------CACG- -5' |
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23758 | 5' | -62.6 | NC_005261.1 | + | 98568 | 0.69 | 0.399304 |
Target: 5'- cGGGCGGCc-GUCCUccGCGGGCUcggGCg -3' miRNA: 3'- uCCCGCUGcaCGGGA--CGCCCGAca-CG- -5' |
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23758 | 5' | -62.6 | NC_005261.1 | + | 38344 | 0.69 | 0.415987 |
Target: 5'- uGGGGCG-CGcacGCCCaGCGGGCcuuUGggGCg -3' miRNA: 3'- -UCCCGCuGCa--CGGGaCGCCCG---ACa-CG- -5' |
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23758 | 5' | -62.6 | NC_005261.1 | + | 111755 | 0.69 | 0.424487 |
Target: 5'- cGGGCagcuCGUGCaCCUGCgcugcgcgcccGGGgUGUGCc -3' miRNA: 3'- uCCCGcu--GCACG-GGACG-----------CCCgACACG- -5' |
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23758 | 5' | -62.6 | NC_005261.1 | + | 88178 | 0.69 | 0.433089 |
Target: 5'- cGGGGCGACGccggcgGCgCCggcgagGCGGGCcGcGCc -3' miRNA: 3'- -UCCCGCUGCa-----CG-GGa-----CGCCCGaCaCG- -5' |
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23758 | 5' | -62.6 | NC_005261.1 | + | 51778 | 0.68 | 0.441793 |
Target: 5'- uGGcCGGCGUcGCCCUGCuGGCcGUGg -3' miRNA: 3'- uCCcGCUGCA-CGGGACGcCCGaCACg -5' |
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23758 | 5' | -62.6 | NC_005261.1 | + | 125709 | 0.68 | 0.441793 |
Target: 5'- -cGGCGACG-GCCgCcGCGGGCUcgGCu -3' miRNA: 3'- ucCCGCUGCaCGG-GaCGCCCGAcaCG- -5' |
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23758 | 5' | -62.6 | NC_005261.1 | + | 105592 | 0.68 | 0.459491 |
Target: 5'- cGGGGCG-CGUGCgcgcgacgaacgCCUGCGGcacguccccGCUcccGUGCg -3' miRNA: 3'- -UCCCGCuGCACG------------GGACGCC---------CGA---CACG- -5' |
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23758 | 5' | -62.6 | NC_005261.1 | + | 134857 | 0.68 | 0.459491 |
Target: 5'- cGGGGacaaGGCGcccgcGCCCccGCGGGCcccugcUGUGCg -3' miRNA: 3'- -UCCCg---CUGCa----CGGGa-CGCCCG------ACACG- -5' |
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23758 | 5' | -62.6 | NC_005261.1 | + | 38950 | 0.68 | 0.459491 |
Target: 5'- cGGGCcGCG-GCgC-GCGGGCUGcGCa -3' miRNA: 3'- uCCCGcUGCaCGgGaCGCCCGACaCG- -5' |
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23758 | 5' | -62.6 | NC_005261.1 | + | 96849 | 0.68 | 0.468481 |
Target: 5'- cGGGGuCGACGggggGCUCggggggcGCGGGUagcGUGCg -3' miRNA: 3'- -UCCC-GCUGCa---CGGGa------CGCCCGa--CACG- -5' |
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23758 | 5' | -62.6 | NC_005261.1 | + | 44305 | 0.68 | 0.468481 |
Target: 5'- cAGGGCcGC-UGCCC-GCGGGCgccGCa -3' miRNA: 3'- -UCCCGcUGcACGGGaCGCCCGacaCG- -5' |
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23758 | 5' | -62.6 | NC_005261.1 | + | 124206 | 0.68 | 0.47756 |
Target: 5'- -cGGUGGCGUGaaCUGCGuGGCUGccaGCa -3' miRNA: 3'- ucCCGCUGCACggGACGC-CCGACa--CG- -5' |
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23758 | 5' | -62.6 | NC_005261.1 | + | 38276 | 0.68 | 0.47756 |
Target: 5'- gGGGGCGGCugGUGCac-GCGGuGCUG-GCc -3' miRNA: 3'- -UCCCGCUG--CACGggaCGCC-CGACaCG- -5' |
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23758 | 5' | -62.6 | NC_005261.1 | + | 68855 | 0.68 | 0.47756 |
Target: 5'- cGGG-GACGccCUCUGcCGcGGCUGUGCg -3' miRNA: 3'- uCCCgCUGCacGGGAC-GC-CCGACACG- -5' |
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23758 | 5' | -62.6 | NC_005261.1 | + | 64494 | 0.68 | 0.484885 |
Target: 5'- cGGGUGGCGcgggugcucgggGCCC-GCGGGCg--GCu -3' miRNA: 3'- uCCCGCUGCa-----------CGGGaCGCCCGacaCG- -5' |
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23758 | 5' | -62.6 | NC_005261.1 | + | 60064 | 0.68 | 0.486725 |
Target: 5'- aAGaGCGGCGgccgGUCC-GCGGGCUGcguggGCa -3' miRNA: 3'- -UCcCGCUGCa---CGGGaCGCCCGACa----CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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