miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23758 5' -62.6 NC_005261.1 + 47479 0.67 0.52322
Target:  5'- uGGGCGAUGUcggcgaaGCuCCgguagaaGCGGGCUGUc- -3'
miRNA:   3'- uCCCGCUGCA-------CG-GGa------CGCCCGACAcg -5'
23758 5' -62.6 NC_005261.1 + 51778 0.68 0.441793
Target:  5'- uGGcCGGCGUcGCCCUGCuGGCcGUGg -3'
miRNA:   3'- uCCcGCUGCA-CGGGACGcCCGaCACg -5'
23758 5' -62.6 NC_005261.1 + 55713 0.69 0.391124
Target:  5'- uGGGCGgccacGCGUGUCuCUaugucGCGGGC-GUGCu -3'
miRNA:   3'- uCCCGC-----UGCACGG-GA-----CGCCCGaCACG- -5'
23758 5' -62.6 NC_005261.1 + 56154 0.67 0.543305
Target:  5'- gAGGGUGGCGgcagcggcgggGCCC-GCGGGgaGgacgacGCg -3'
miRNA:   3'- -UCCCGCUGCa----------CGGGaCGCCCgaCa-----CG- -5'
23758 5' -62.6 NC_005261.1 + 57828 0.69 0.383055
Target:  5'- aGGGGuCcACGUGCUCcGCGGGCgcgGgcgGCa -3'
miRNA:   3'- -UCCC-GcUGCACGGGaCGCCCGa--Ca--CG- -5'
23758 5' -62.6 NC_005261.1 + 60064 0.68 0.486725
Target:  5'- aAGaGCGGCGgccgGUCC-GCGGGCUGcguggGCa -3'
miRNA:   3'- -UCcCGCUGCa---CGGGaCGCCCGACa----CG- -5'
23758 5' -62.6 NC_005261.1 + 63026 0.67 0.514699
Target:  5'- cGGGCGcCGgcGCCCgcgGCGaGGCgGUcGCg -3'
miRNA:   3'- uCCCGCuGCa-CGGGa--CGC-CCGaCA-CG- -5'
23758 5' -62.6 NC_005261.1 + 64494 0.68 0.484885
Target:  5'- cGGGUGGCGcgggugcucgggGCCC-GCGGGCg--GCu -3'
miRNA:   3'- uCCCGCUGCa-----------CGGGaCGCCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 64919 0.72 0.288565
Target:  5'- cAGcGCGGCGUGCuCCUGCucgccgcccagGGGCgcGUGCg -3'
miRNA:   3'- -UCcCGCUGCACG-GGACG-----------CCCGa-CACG- -5'
23758 5' -62.6 NC_005261.1 + 65807 0.66 0.570459
Target:  5'- cGGGuCGGgGUGCCCgggcgGCGGcGCgaagcugcccgaGUGCc -3'
miRNA:   3'- uCCC-GCUgCACGGGa----CGCC-CGa-----------CACG- -5'
23758 5' -62.6 NC_005261.1 + 68091 0.67 0.505298
Target:  5'- gGGGGCGGgGagGCCgUGaaguuCGGGCUGgagcUGCg -3'
miRNA:   3'- -UCCCGCUgCa-CGGgAC-----GCCCGAC----ACG- -5'
23758 5' -62.6 NC_005261.1 + 68711 0.69 0.391124
Target:  5'- -cGGCGGCGccgGCCCUcacgcgGCGGGCgccgGCg -3'
miRNA:   3'- ucCCGCUGCa--CGGGA------CGCCCGaca-CG- -5'
23758 5' -62.6 NC_005261.1 + 68855 0.68 0.47756
Target:  5'- cGGG-GACGccCUCUGcCGcGGCUGUGCg -3'
miRNA:   3'- uCCCgCUGCacGGGAC-GC-CCGACACG- -5'
23758 5' -62.6 NC_005261.1 + 70457 0.66 0.562662
Target:  5'- gAGGGUGuACGUcaGCCCgcgccGCGGGUgc-GCg -3'
miRNA:   3'- -UCCCGC-UGCA--CGGGa----CGCCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 70864 0.66 0.552958
Target:  5'- cAGGGCGGCc-GCCgUgGCGuGGCcggcgGUGCa -3'
miRNA:   3'- -UCCCGCUGcaCGGgA-CGC-CCGa----CACG- -5'
23758 5' -62.6 NC_005261.1 + 74475 0.71 0.295138
Target:  5'- cGGcGCGGCGUGCCUggGCGGGaucucgGCg -3'
miRNA:   3'- uCC-CGCUGCACGGGa-CGCCCgaca--CG- -5'
23758 5' -62.6 NC_005261.1 + 76058 0.68 0.486725
Target:  5'- uGGcCGGCGggcGCCaccaggGCGGGCUGcUGCg -3'
miRNA:   3'- uCCcGCUGCa--CGGga----CGCCCGAC-ACG- -5'
23758 5' -62.6 NC_005261.1 + 81428 0.66 0.592023
Target:  5'- -aGGCGGCGUcgucggccGCCCcgcgGCGGGCgccGCc -3'
miRNA:   3'- ucCCGCUGCA--------CGGGa---CGCCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 83846 0.71 0.329743
Target:  5'- cGGGCcGCG-GCCCcGCuGGGCUGgGCc -3'
miRNA:   3'- uCCCGcUGCaCGGGaCG-CCCGACaCG- -5'
23758 5' -62.6 NC_005261.1 + 86300 0.66 0.601874
Target:  5'- cAGGGC-ACGUcGCCCUccaGCGuGCUG-GCc -3'
miRNA:   3'- -UCCCGcUGCA-CGGGA---CGCcCGACaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.