miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23758 5' -62.6 NC_005261.1 + 111609 0.66 0.562662
Target:  5'- uGGGCG-CG-GCUgggCUGCGGcGCcGUGCc -3'
miRNA:   3'- uCCCGCuGCaCGG---GACGCC-CGaCACG- -5'
23758 5' -62.6 NC_005261.1 + 111460 0.67 0.533707
Target:  5'- cGGGCGcCGgcgagGCCaaaagGCGGGCggGUGa -3'
miRNA:   3'- uCCCGCuGCa----CGGga---CGCCCGa-CACg -5'
23758 5' -62.6 NC_005261.1 + 110454 0.71 0.329743
Target:  5'- cGGGCGuuuGgGUGCCUggGCGGGCUGc-- -3'
miRNA:   3'- uCCCGC---UgCACGGGa-CGCCCGACacg -5'
23758 5' -62.6 NC_005261.1 + 110242 0.74 0.198611
Target:  5'- uGGGCGGCGcggcGCCCgGgGGGCUGcggGCc -3'
miRNA:   3'- uCCCGCUGCa---CGGGaCgCCCGACa--CG- -5'
23758 5' -62.6 NC_005261.1 + 109869 0.72 0.263426
Target:  5'- gGGGGCaGCGggGCCC-GCGGGCgg-GCg -3'
miRNA:   3'- -UCCCGcUGCa-CGGGaCGCCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 109120 0.7 0.351903
Target:  5'- gAGGGCGGCgGUGUCgUGCGcGGCcccagGCa -3'
miRNA:   3'- -UCCCGCUG-CACGGgACGC-CCGaca--CG- -5'
23758 5' -62.6 NC_005261.1 + 107183 0.7 0.375097
Target:  5'- -cGGCGGCGUaGCCCUGCagccgcgcgaaGGCggcGUGCa -3'
miRNA:   3'- ucCCGCUGCA-CGGGACGc----------CCGa--CACG- -5'
23758 5' -62.6 NC_005261.1 + 105592 0.68 0.459491
Target:  5'- cGGGGCG-CGUGCgcgcgacgaacgCCUGCGGcacguccccGCUcccGUGCg -3'
miRNA:   3'- -UCCCGCuGCACG------------GGACGCC---------CGA---CACG- -5'
23758 5' -62.6 NC_005261.1 + 104648 0.7 0.35952
Target:  5'- aGGaGGUGACGaacGCgCUgGCGGGCgUGUGCu -3'
miRNA:   3'- -UC-CCGCUGCa--CGgGA-CGCCCG-ACACG- -5'
23758 5' -62.6 NC_005261.1 + 100813 0.67 0.495044
Target:  5'- aAGGGCG-CGUGCgCCUGCGccgcccaGGCcGggaGCu -3'
miRNA:   3'- -UCCCGCuGCACG-GGACGC-------CCGaCa--CG- -5'
23758 5' -62.6 NC_005261.1 + 98568 0.69 0.399304
Target:  5'- cGGGCGGCc-GUCCUccGCGGGCUcggGCg -3'
miRNA:   3'- uCCCGCUGcaCGGGA--CGCCCGAca-CG- -5'
23758 5' -62.6 NC_005261.1 + 98475 0.69 0.399304
Target:  5'- cGGGCGGCc-GUCCUccGCGGGCUcgggcggguaagGUGCc -3'
miRNA:   3'- uCCCGCUGcaCGGGA--CGCCCGA------------CACG- -5'
23758 5' -62.6 NC_005261.1 + 98057 0.71 0.315552
Target:  5'- cGGGCGGCGggaCC-GCGGGCggcggGUGUg -3'
miRNA:   3'- uCCCGCUGCacgGGaCGCCCGa----CACG- -5'
23758 5' -62.6 NC_005261.1 + 97700 0.7 0.35952
Target:  5'- cGGGGCGguggggagacgGCGggugGCCCggGCGGGCUaacgGCu -3'
miRNA:   3'- -UCCCGC-----------UGCa---CGGGa-CGCCCGAca--CG- -5'
23758 5' -62.6 NC_005261.1 + 97419 0.66 0.55199
Target:  5'- cGGGCG-CGccgggccUGCCCUugggcGCGGGuCUGgGCu -3'
miRNA:   3'- uCCCGCuGC-------ACGGGA-----CGCCC-GACaCG- -5'
23758 5' -62.6 NC_005261.1 + 96849 0.68 0.468481
Target:  5'- cGGGGuCGACGggggGCUCggggggcGCGGGUagcGUGCg -3'
miRNA:   3'- -UCCC-GCUGCa---CGGGa------CGCCCGa--CACG- -5'
23758 5' -62.6 NC_005261.1 + 94859 0.67 0.533707
Target:  5'- -cGGCGcucGCGcacgGCCCggGCGGGCggcccgcGUGCa -3'
miRNA:   3'- ucCCGC---UGCa---CGGGa-CGCCCGa------CACG- -5'
23758 5' -62.6 NC_005261.1 + 93913 0.72 0.288565
Target:  5'- cGGGCG-CGgcGCCC-GCGGGCU-UGCg -3'
miRNA:   3'- uCCCGCuGCa-CGGGaCGCCCGAcACG- -5'
23758 5' -62.6 NC_005261.1 + 93676 0.7 0.3444
Target:  5'- cGGGCGGCG-GCgCCgGCGgGGCgccggcggGUGCc -3'
miRNA:   3'- uCCCGCUGCaCG-GGaCGC-CCGa-------CACG- -5'
23758 5' -62.6 NC_005261.1 + 90209 0.77 0.130782
Target:  5'- gGGGGCGGCGgagcGCCCUcgcgcgGCGGGCgg-GCg -3'
miRNA:   3'- -UCCCGCUGCa---CGGGA------CGCCCGacaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.