miRNA display CGI


Results 61 - 80 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23758 5' -62.6 NC_005261.1 + 51778 0.68 0.441793
Target:  5'- uGGcCGGCGUcGCCCUGCuGGCcGUGg -3'
miRNA:   3'- uCCcGCUGCA-CGGGACGcCCGaCACg -5'
23758 5' -62.6 NC_005261.1 + 47479 0.67 0.52322
Target:  5'- uGGGCGAUGUcggcgaaGCuCCgguagaaGCGGGCUGUc- -3'
miRNA:   3'- uCCCGCUGCA-------CG-GGa------CGCCCGACAcg -5'
23758 5' -62.6 NC_005261.1 + 44967 0.66 0.592023
Target:  5'- cGGGaCGcGCGcgaggGCCCggGCGGGCcgccacagGUGCu -3'
miRNA:   3'- uCCC-GC-UGCa----CGGGa-CGCCCGa-------CACG- -5'
23758 5' -62.6 NC_005261.1 + 44305 0.68 0.468481
Target:  5'- cAGGGCcGC-UGCCC-GCGGGCgccGCa -3'
miRNA:   3'- -UCCCGcUGcACGGGaCGCCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 43615 0.72 0.269539
Target:  5'- gAGGGCGA-GUGCUucgugCUGUGGGCgcccGUGUg -3'
miRNA:   3'- -UCCCGCUgCACGG-----GACGCCCGa---CACG- -5'
23758 5' -62.6 NC_005261.1 + 39861 0.66 0.582201
Target:  5'- cGGGCGcccaggcacACGgccagcagGCCgCgcGCGcGGCUGUGCa -3'
miRNA:   3'- uCCCGC---------UGCa-------CGG-Ga-CGC-CCGACACG- -5'
23758 5' -62.6 NC_005261.1 + 38950 0.68 0.459491
Target:  5'- cGGGCcGCG-GCgC-GCGGGCUGcGCa -3'
miRNA:   3'- uCCCGcUGCaCGgGaCGCCCGACaCG- -5'
23758 5' -62.6 NC_005261.1 + 38344 0.69 0.415987
Target:  5'- uGGGGCG-CGcacGCCCaGCGGGCcuuUGggGCg -3'
miRNA:   3'- -UCCCGCuGCa--CGGGaCGCCCG---ACa-CG- -5'
23758 5' -62.6 NC_005261.1 + 38276 0.68 0.47756
Target:  5'- gGGGGCGGCugGUGCac-GCGGuGCUG-GCc -3'
miRNA:   3'- -UCCCGCUG--CACGggaCGCC-CGACaCG- -5'
23758 5' -62.6 NC_005261.1 + 37359 0.7 0.337014
Target:  5'- cGGGCGGugcuCGccGCCCgagGCGGcGCUGUGg -3'
miRNA:   3'- uCCCGCU----GCa-CGGGa--CGCC-CGACACg -5'
23758 5' -62.6 NC_005261.1 + 36987 0.67 0.533707
Target:  5'- cGGGCuccagcCGgaGCCC-GCGGGCUGcGCg -3'
miRNA:   3'- uCCCGcu----GCa-CGGGaCGCCCGACaCG- -5'
23758 5' -62.6 NC_005261.1 + 33615 0.69 0.383055
Target:  5'- cGGGCGGCGggGCCC-GgGGGCgc-GCc -3'
miRNA:   3'- uCCCGCUGCa-CGGGaCgCCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 32147 0.67 0.514699
Target:  5'- gGGGGCucGGCGcGCCgCUGCGGcCgGUGUa -3'
miRNA:   3'- -UCCCG--CUGCaCGG-GACGCCcGaCACG- -5'
23758 5' -62.6 NC_005261.1 + 31761 0.66 0.601874
Target:  5'- -aGGCGcACGUGUaCCUGCGcGCcgcgGUGCu -3'
miRNA:   3'- ucCCGC-UGCACG-GGACGCcCGa---CACG- -5'
23758 5' -62.6 NC_005261.1 + 30875 0.69 0.399304
Target:  5'- gGGGGcCGcCG-GCCCUGCcgcccgagcucGGGCUGggGCc -3'
miRNA:   3'- -UCCC-GCuGCaCGGGACG-----------CCCGACa-CG- -5'
23758 5' -62.6 NC_005261.1 + 27453 0.66 0.582201
Target:  5'- -uGGCGGCGggccGCCCcGCGgGGCgg-GCa -3'
miRNA:   3'- ucCCGCUGCa---CGGGaCGC-CCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 27236 0.71 0.308631
Target:  5'- aAGGGgGAgGcGCCUggggugggGCGGGgUGUGCg -3'
miRNA:   3'- -UCCCgCUgCaCGGGa-------CGCCCgACACG- -5'
23758 5' -62.6 NC_005261.1 + 24396 0.67 0.543305
Target:  5'- -cGGCGGCGgggcgGUCCUGgGGGCUcggauccucgGUuGCg -3'
miRNA:   3'- ucCCGCUGCa----CGGGACgCCCGA----------CA-CG- -5'
23758 5' -62.6 NC_005261.1 + 23870 0.7 0.3444
Target:  5'- uGGGGCgGGCuUGCCCcggGCGGGCcG-GCu -3'
miRNA:   3'- -UCCCG-CUGcACGGGa--CGCCCGaCaCG- -5'
23758 5' -62.6 NC_005261.1 + 23813 0.7 0.3444
Target:  5'- uGGGGCgGGCuUGCCCcggGCGGGCcG-GCu -3'
miRNA:   3'- -UCCCG-CUGcACGGGa--CGCCCGaCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.