miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23758 5' -62.6 NC_005261.1 + 13692 0.73 0.240094
Target:  5'- cGGGCGugGgGCgggGCGGGCUGgggGCg -3'
miRNA:   3'- uCCCGCugCaCGggaCGCCCGACa--CG- -5'
23758 5' -62.6 NC_005261.1 + 21014 0.73 0.223748
Target:  5'- gGGGGCGugacacCGaGCCCUGgGGGCgcgcaccGUGCg -3'
miRNA:   3'- -UCCCGCu-----GCaCGGGACgCCCGa------CACG- -5'
23758 5' -62.6 NC_005261.1 + 11831 0.74 0.208357
Target:  5'- gGGGGCGGgG-GCCCcGCGGGCgc-GCg -3'
miRNA:   3'- -UCCCGCUgCaCGGGaCGCCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 110242 0.74 0.198611
Target:  5'- uGGGCGGCGcggcGCCCgGgGGGCUGcggGCc -3'
miRNA:   3'- uCCCGCUGCa---CGGGaCgCCCGACa--CG- -5'
23758 5' -62.6 NC_005261.1 + 20442 0.74 0.193889
Target:  5'- gGGGGagcgcaGACGUGCCCgcGCGGGUgugGCg -3'
miRNA:   3'- -UCCCg-----CUGCACGGGa-CGCCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 74475 0.71 0.295138
Target:  5'- cGGcGCGGCGUGCCUggGCGGGaucucgGCg -3'
miRNA:   3'- uCC-CGCUGCACGGGa-CGCCCgaca--CG- -5'
23758 5' -62.6 NC_005261.1 + 118856 0.71 0.301152
Target:  5'- gAGGGCGGCGcgcccgcgGCCCUggccucggccaccGCGGGCgcgcugGUGg -3'
miRNA:   3'- -UCCCGCUGCa-------CGGGA-------------CGCCCGa-----CACg -5'
23758 5' -62.6 NC_005261.1 + 133818 0.7 0.3444
Target:  5'- -cGGCGACGagGCgCUGCGcGGCcgcGUGCg -3'
miRNA:   3'- ucCCGCUGCa-CGgGACGC-CCGa--CACG- -5'
23758 5' -62.6 NC_005261.1 + 93676 0.7 0.3444
Target:  5'- cGGGCGGCG-GCgCCgGCGgGGCgccggcggGUGCc -3'
miRNA:   3'- uCCCGCUGCaCG-GGaCGC-CCGa-------CACG- -5'
23758 5' -62.6 NC_005261.1 + 23870 0.7 0.3444
Target:  5'- uGGGGCgGGCuUGCCCcggGCGGGCcG-GCu -3'
miRNA:   3'- -UCCCG-CUGcACGGGa--CGCCCGaCaCG- -5'
23758 5' -62.6 NC_005261.1 + 23813 0.7 0.3444
Target:  5'- uGGGGCgGGCuUGCCCcggGCGGGCcG-GCu -3'
miRNA:   3'- -UCCCG-CUGcACGGGa--CGCCCGaCaCG- -5'
23758 5' -62.6 NC_005261.1 + 17555 0.7 0.3444
Target:  5'- cGGGCccgccguucGGCGgugGCCUUGCGGGCgagcugGCa -3'
miRNA:   3'- uCCCG---------CUGCa--CGGGACGCCCGaca---CG- -5'
23758 5' -62.6 NC_005261.1 + 37359 0.7 0.337014
Target:  5'- cGGGCGGugcuCGccGCCCgagGCGGcGCUGUGg -3'
miRNA:   3'- uCCCGCU----GCa-CGGGa--CGCC-CGACACg -5'
23758 5' -62.6 NC_005261.1 + 23756 0.7 0.337014
Target:  5'- aGGGGCgGGCuUGCCCcggGCGGGCcG-GCu -3'
miRNA:   3'- -UCCCG-CUGcACGGGa--CGCCCGaCaCG- -5'
23758 5' -62.6 NC_005261.1 + 83846 0.71 0.329743
Target:  5'- cGGGCcGCG-GCCCcGCuGGGCUGgGCc -3'
miRNA:   3'- uCCCGcUGCaCGGGaCG-CCCGACaCG- -5'
23758 5' -62.6 NC_005261.1 + 110454 0.71 0.329743
Target:  5'- cGGGCGuuuGgGUGCCUggGCGGGCUGc-- -3'
miRNA:   3'- uCCCGC---UgCACGGGa-CGCCCGACacg -5'
23758 5' -62.6 NC_005261.1 + 98057 0.71 0.315552
Target:  5'- cGGGCGGCGggaCC-GCGGGCggcggGUGUg -3'
miRNA:   3'- uCCCGCUGCacgGGaCGCCCGa----CACG- -5'
23758 5' -62.6 NC_005261.1 + 27236 0.71 0.308631
Target:  5'- aAGGGgGAgGcGCCUggggugggGCGGGgUGUGCg -3'
miRNA:   3'- -UCCCgCUgCaCGGGa-------CGCCCgACACG- -5'
23758 5' -62.6 NC_005261.1 + 121807 0.71 0.308631
Target:  5'- gGGGGCG-CGUggcuggGCUCUGCGGGCcGccGCg -3'
miRNA:   3'- -UCCCGCuGCA------CGGGACGCCCGaCa-CG- -5'
23758 5' -62.6 NC_005261.1 + 132645 0.71 0.301826
Target:  5'- cGGGcGCGGCG-GCCCUaGCGGccGCguguggGUGCg -3'
miRNA:   3'- -UCC-CGCUGCaCGGGA-CGCC--CGa-----CACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.