miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23758 5' -62.6 NC_005261.1 + 56154 0.67 0.543305
Target:  5'- gAGGGUGGCGgcagcggcgggGCCC-GCGGGgaGgacgacGCg -3'
miRNA:   3'- -UCCCGCUGCa----------CGGGaCGCCCgaCa-----CG- -5'
23758 5' -62.6 NC_005261.1 + 123179 0.67 0.543305
Target:  5'- cGGGCGugGUGgCUggUGUGGGCg---- -3'
miRNA:   3'- uCCCGCugCACgGG--ACGCCCGacacg -5'
23758 5' -62.6 NC_005261.1 + 121391 0.67 0.543305
Target:  5'- cGGcGGCGGCGccUGCCCgagUGCGacGGCUGccGCc -3'
miRNA:   3'- -UC-CCGCUGC--ACGGG---ACGC--CCGACa-CG- -5'
23758 5' -62.6 NC_005261.1 + 113287 0.67 0.542342
Target:  5'- gAGGGCGugGUcCUCUcgcugccGCGGGcCUGgGCc -3'
miRNA:   3'- -UCCCGCugCAcGGGA-------CGCCC-GACaCG- -5'
23758 5' -62.6 NC_005261.1 + 11880 0.67 0.542342
Target:  5'- cGGGGCGagcccgcccgcacGCGcGCCCgccGCGGGCccgGCc -3'
miRNA:   3'- -UCCCGC-------------UGCaCGGGa--CGCCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 135295 0.67 0.533707
Target:  5'- cGGGUuccgcgcgaccGGCGUgucGCCCUGgGcGGCcGUGCu -3'
miRNA:   3'- uCCCG-----------CUGCA---CGGGACgC-CCGaCACG- -5'
23758 5' -62.6 NC_005261.1 + 111460 0.67 0.533707
Target:  5'- cGGGCGcCGgcgagGCCaaaagGCGGGCggGUGa -3'
miRNA:   3'- uCCCGCuGCa----CGGga---CGCCCGa-CACg -5'
23758 5' -62.6 NC_005261.1 + 94859 0.67 0.533707
Target:  5'- -cGGCGcucGCGcacgGCCCggGCGGGCggcccgcGUGCa -3'
miRNA:   3'- ucCCGC---UGCa---CGGGa-CGCCCGa------CACG- -5'
23758 5' -62.6 NC_005261.1 + 36987 0.67 0.533707
Target:  5'- cGGGCuccagcCGgaGCCC-GCGGGCUGcGCg -3'
miRNA:   3'- uCCCGcu----GCa-CGGGaCGCCCGACaCG- -5'
23758 5' -62.6 NC_005261.1 + 12312 0.67 0.52417
Target:  5'- cGGGCG-CGUaGCCg-GCGGGCgc-GCg -3'
miRNA:   3'- uCCCGCuGCA-CGGgaCGCCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 90084 0.67 0.52417
Target:  5'- gAGGGCagcGACGgggGCCCguucGCcGGCUGgGCc -3'
miRNA:   3'- -UCCCG---CUGCa--CGGGa---CGcCCGACaCG- -5'
23758 5' -62.6 NC_005261.1 + 47479 0.67 0.52322
Target:  5'- uGGGCGAUGUcggcgaaGCuCCgguagaaGCGGGCUGUc- -3'
miRNA:   3'- uCCCGCUGCA-------CG-GGa------CGCCCGACAcg -5'
23758 5' -62.6 NC_005261.1 + 63026 0.67 0.514699
Target:  5'- cGGGCGcCGgcGCCCgcgGCGaGGCgGUcGCg -3'
miRNA:   3'- uCCCGCuGCa-CGGGa--CGC-CCGaCA-CG- -5'
23758 5' -62.6 NC_005261.1 + 32147 0.67 0.514699
Target:  5'- gGGGGCucGGCGcGCCgCUGCGGcCgGUGUa -3'
miRNA:   3'- -UCCCG--CUGCaCGG-GACGCCcGaCACG- -5'
23758 5' -62.6 NC_005261.1 + 4541 0.67 0.514699
Target:  5'- gAGGGCGcCGgGCCCUgGCcuuGGCUGgauccGCg -3'
miRNA:   3'- -UCCCGCuGCaCGGGA-CGc--CCGACa----CG- -5'
23758 5' -62.6 NC_005261.1 + 118307 0.67 0.505298
Target:  5'- cGGGGCGcacuuccgcaccGCGcUGCuggccaugaCCUGCGGGCUGcuccucgGCc -3'
miRNA:   3'- -UCCCGC------------UGC-ACG---------GGACGCCCGACa------CG- -5'
23758 5' -62.6 NC_005261.1 + 68091 0.67 0.505298
Target:  5'- gGGGGCGGgGagGCCgUGaaguuCGGGCUGgagcUGCg -3'
miRNA:   3'- -UCCCGCUgCa-CGGgAC-----GCCCGAC----ACG- -5'
23758 5' -62.6 NC_005261.1 + 12722 0.67 0.501559
Target:  5'- cGGGCGcGCGgGCCCgccggcccccuggGCGGGCccgGCg -3'
miRNA:   3'- uCCCGC-UGCaCGGGa------------CGCCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 4401 0.67 0.495972
Target:  5'- cGGGCGGCGgcggcGCgCUGCcGGGCcagGCc -3'
miRNA:   3'- uCCCGCUGCa----CGgGACG-CCCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 1048 0.67 0.495972
Target:  5'- cGGGCGGCGgcguuagcgGCgCgGgGGGCUG-GCc -3'
miRNA:   3'- uCCCGCUGCa--------CGgGaCgCCCGACaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.