miRNA display CGI


Results 21 - 40 of 357 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23759 3' -61.8 NC_005261.1 + 138121 0.66 0.639573
Target:  5'- cGgGgaCGGg---GGCCGCGaCGGCCg -3'
miRNA:   3'- aCgCgaGCCaguaCCGGUGC-GCCGGg -5'
23759 3' -61.8 NC_005261.1 + 118610 0.66 0.639573
Target:  5'- cGCGCugUCGGcCGuugcccUGGCCGCcGCGGCn- -3'
miRNA:   3'- aCGCG--AGCCaGU------ACCGGUG-CGCCGgg -5'
23759 3' -61.8 NC_005261.1 + 4161 0.66 0.639573
Target:  5'- gGCGCgccagcugcaGGUCcgGGCC-CGCGaGCUu -3'
miRNA:   3'- aCGCGag--------CCAGuaCCGGuGCGC-CGGg -5'
23759 3' -61.8 NC_005261.1 + 14225 0.66 0.639573
Target:  5'- cGCGCgCGGUgAaGaCCGCGCcGGCCg -3'
miRNA:   3'- aCGCGaGCCAgUaCcGGUGCG-CCGGg -5'
23759 3' -61.8 NC_005261.1 + 65358 0.66 0.639573
Target:  5'- aUGaCGCggGG-CAUGGCC-CGCacGCCCg -3'
miRNA:   3'- -AC-GCGagCCaGUACCGGuGCGc-CGGG- -5'
23759 3' -61.8 NC_005261.1 + 118055 0.66 0.639573
Target:  5'- cGCGCUggCGGcCGcGGCa--GCGGCCg -3'
miRNA:   3'- aCGCGA--GCCaGUaCCGgugCGCCGGg -5'
23759 3' -61.8 NC_005261.1 + 450 0.66 0.639573
Target:  5'- cGgGgaCGGg---GGCCGCGaCGGCCg -3'
miRNA:   3'- aCgCgaGCCaguaCCGGUGC-GCCGGg -5'
23759 3' -61.8 NC_005261.1 + 133932 0.66 0.639573
Target:  5'- cGCGUUCGuGUaccUGcGCCagGCGCGGCgCa -3'
miRNA:   3'- aCGCGAGC-CAgu-AC-CGG--UGCGCCGgG- -5'
23759 3' -61.8 NC_005261.1 + 11899 0.66 0.639573
Target:  5'- cGCGCgcccgccgCGGgCccGGCCcggccggcggcuGCgGCGGCCCg -3'
miRNA:   3'- aCGCGa-------GCCaGuaCCGG------------UG-CGCCGGG- -5'
23759 3' -61.8 NC_005261.1 + 30936 0.66 0.639573
Target:  5'- gGCGCagccccUCGGgggCG-GGCCucgaggcccgccGCGaCGGCCCg -3'
miRNA:   3'- aCGCG------AGCCa--GUaCCGG------------UGC-GCCGGG- -5'
23759 3' -61.8 NC_005261.1 + 23708 0.66 0.638584
Target:  5'- -cCGCcCGGUCggguggcaagcggGUGGCCGCGCcgaGGCgCg -3'
miRNA:   3'- acGCGaGCCAG-------------UACCGGUGCG---CCGgG- -5'
23759 3' -61.8 NC_005261.1 + 17513 0.66 0.638584
Target:  5'- aUGgGCUCguacgcagGGUUAUccuuggcaaacugGGCgGCGCGGgCCCg -3'
miRNA:   3'- -ACgCGAG--------CCAGUA-------------CCGgUGCGCC-GGG- -5'
23759 3' -61.8 NC_005261.1 + 17027 0.66 0.636603
Target:  5'- cGCGCUCGucgCGUagcgcaccucgacgGGCUgcuCGCGGCCg -3'
miRNA:   3'- aCGCGAGCca-GUA--------------CCGGu--GCGCCGGg -5'
23759 3' -61.8 NC_005261.1 + 109331 0.66 0.634623
Target:  5'- aGCGCggccgCGGggucggcggccgCGUcGCCguccagccgcucgaGCGCGGCCCa -3'
miRNA:   3'- aCGCGa----GCCa-----------GUAcCGG--------------UGCGCCGGG- -5'
23759 3' -61.8 NC_005261.1 + 99879 0.66 0.629673
Target:  5'- cGcCGCUCGGcgcgagggCGUugaccGCCACcCGGCCCg -3'
miRNA:   3'- aC-GCGAGCCa-------GUAc----CGGUGcGCCGGG- -5'
23759 3' -61.8 NC_005261.1 + 38606 0.66 0.629673
Target:  5'- cGCgGCUggcgGGUguUGGCCGCGgcCGaGCCCg -3'
miRNA:   3'- aCG-CGAg---CCAguACCGGUGC--GC-CGGG- -5'
23759 3' -61.8 NC_005261.1 + 13857 0.66 0.629673
Target:  5'- cGuCGC-CGG-CGUcGCCG-GCGGCCCg -3'
miRNA:   3'- aC-GCGaGCCaGUAcCGGUgCGCCGGG- -5'
23759 3' -61.8 NC_005261.1 + 72857 0.66 0.629673
Target:  5'- aGCGCccaGG-CGUGGaCCGCGggcaGGUCCg -3'
miRNA:   3'- aCGCGag-CCaGUACC-GGUGCg---CCGGG- -5'
23759 3' -61.8 NC_005261.1 + 133152 0.66 0.629673
Target:  5'- cGCGCUCGccgccgucggcGUCGccGCCGacaacCGCGGCgCCg -3'
miRNA:   3'- aCGCGAGC-----------CAGUacCGGU-----GCGCCG-GG- -5'
23759 3' -61.8 NC_005261.1 + 23629 0.66 0.629673
Target:  5'- gGCGCggCGGg---GGUCGgGCGGCUg -3'
miRNA:   3'- aCGCGa-GCCaguaCCGGUgCGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.