miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23759 5' -53.9 NC_005261.1 + 87078 0.66 0.929726
Target:  5'- -cGGGCC-CAGCAcgUAGCc-GUGCAGc -3'
miRNA:   3'- gaCCCGGaGUCGUa-GUCGuuCAUGUU- -5'
23759 5' -53.9 NC_005261.1 + 5535 0.66 0.92415
Target:  5'- --cGGCUUCGGCGcgCAGCGAG-ACGGg -3'
miRNA:   3'- gacCCGGAGUCGUa-GUCGUUCaUGUU- -5'
23759 5' -53.9 NC_005261.1 + 71970 0.66 0.92415
Target:  5'- -gGGGCgCggAGCGcgCGGCAGGUGCGc -3'
miRNA:   3'- gaCCCG-GagUCGUa-GUCGUUCAUGUu -5'
23759 5' -53.9 NC_005261.1 + 40356 0.66 0.92415
Target:  5'- gUGGGgCUC-GCG-CAGCGGGUugAGg -3'
miRNA:   3'- gACCCgGAGuCGUaGUCGUUCAugUU- -5'
23759 5' -53.9 NC_005261.1 + 30492 0.66 0.91831
Target:  5'- -gGGGCCUCGGaaacCAGCGAGg---- -3'
miRNA:   3'- gaCCCGGAGUCgua-GUCGUUCauguu -5'
23759 5' -53.9 NC_005261.1 + 123435 0.66 0.91831
Target:  5'- -cGGGCCgCAGCcgCAGCucGcGCAu -3'
miRNA:   3'- gaCCCGGaGUCGuaGUCGuuCaUGUu -5'
23759 5' -53.9 NC_005261.1 + 62451 0.66 0.91831
Target:  5'- -cGGGCCcCAGCAgCGGCGGaaGCAGg -3'
miRNA:   3'- gaCCCGGaGUCGUaGUCGUUcaUGUU- -5'
23759 5' -53.9 NC_005261.1 + 43362 0.66 0.899225
Target:  5'- gCUGGuGCCgcugcggCGGCAUCGGCcucgcGGUGCc- -3'
miRNA:   3'- -GACC-CGGa------GUCGUAGUCGu----UCAUGuu -5'
23759 5' -53.9 NC_005261.1 + 18769 0.67 0.89235
Target:  5'- -aGGGCCagGGCAaCAGCAGcgGCGAg -3'
miRNA:   3'- gaCCCGGagUCGUaGUCGUUcaUGUU- -5'
23759 5' -53.9 NC_005261.1 + 99580 0.67 0.862387
Target:  5'- uCUGGGCCUgcGCGccCAGCGAGUccaccGCGAg -3'
miRNA:   3'- -GACCCGGAguCGUa-GUCGUUCA-----UGUU- -5'
23759 5' -53.9 NC_005261.1 + 90886 0.68 0.846011
Target:  5'- gCUGGGCgaCGGCAUggcgCGGCAGGUcucgGCGg -3'
miRNA:   3'- -GACCCGgaGUCGUA----GUCGUUCA----UGUu -5'
23759 5' -53.9 NC_005261.1 + 122277 0.68 0.846011
Target:  5'- -aGGGCCgUUAGCAUCAGCGcg-GCc- -3'
miRNA:   3'- gaCCCGG-AGUCGUAGUCGUucaUGuu -5'
23759 5' -53.9 NC_005261.1 + 125324 0.68 0.837499
Target:  5'- -cGcGGCCUCGGCGUCcGCAGcGcGCAGg -3'
miRNA:   3'- gaC-CCGGAGUCGUAGuCGUU-CaUGUU- -5'
23759 5' -53.9 NC_005261.1 + 5507 0.68 0.819867
Target:  5'- -gGGGCCgcggCAGCggCGGCGAGgcCGc -3'
miRNA:   3'- gaCCCGGa---GUCGuaGUCGUUCauGUu -5'
23759 5' -53.9 NC_005261.1 + 83393 0.69 0.801484
Target:  5'- -cGcGGCCUCGGCcgaggCgAGCAGGUGCGc -3'
miRNA:   3'- gaC-CCGGAGUCGua---G-UCGUUCAUGUu -5'
23759 5' -53.9 NC_005261.1 + 101743 0.69 0.772671
Target:  5'- -aGGGCCUC-GC-UCGGCAgcuccaGGUGCAc -3'
miRNA:   3'- gaCCCGGAGuCGuAGUCGU------UCAUGUu -5'
23759 5' -53.9 NC_005261.1 + 124035 0.7 0.742617
Target:  5'- -gGGcGCCUCugagugcgcuAGCGcCAGCAGGUACAGc -3'
miRNA:   3'- gaCC-CGGAG----------UCGUaGUCGUUCAUGUU- -5'
23759 5' -53.9 NC_005261.1 + 32490 0.7 0.742617
Target:  5'- -gGGGCCggcgacggCGGCAUCGGCGGGg---- -3'
miRNA:   3'- gaCCCGGa-------GUCGUAGUCGUUCauguu -5'
23759 5' -53.9 NC_005261.1 + 22544 0.7 0.732372
Target:  5'- -aGGGCCggGGCcgCGGCGAGaUACGGg -3'
miRNA:   3'- gaCCCGGagUCGuaGUCGUUC-AUGUU- -5'
23759 5' -53.9 NC_005261.1 + 62127 0.71 0.679926
Target:  5'- cCUGcaGGCC-CuGCGUCAGCAGGUugGGg -3'
miRNA:   3'- -GAC--CCGGaGuCGUAGUCGUUCAugUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.