miRNA: 3'- -CGGCCACGCUAGUGGGACGGCUACCA- -5'
miRNA: 3'- -CGGCCa----CGcuAGUGGGACG-------------GCUACCA- -5'
miRNA: 3'- -CGGCCa----CGCu-AGU---GGGACGGCUAC-Ca -5'
Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 2376 | 5' | -58.8 | NC_001416.1 | + | 10873 | 1.09 | 0.000389 |
|
Target: 5'- uGCCGGUGCGAUCACCCUGCCGAUGGUg -3' miRNA: 3'- -CGGCCACGCUAGUGGGACGGCUACCA- -5' |
|||||||
| 2376 | 5' | -58.8 | NC_001416.1 | + | 42429 | 0.67 | 0.458677 |
|
Target: 5'- uGCCGGgaaugGUu-UCACCCUGCauucgcuaaucagUGGUGGUg -3' miRNA: 3'- -CGGCCa----CGcuAGUGGGACG-------------GCUACCA- -5' |
|||||||
| 2376 | 5' | -58.8 | NC_001416.1 | + | 7517 | 0.66 | 0.499699 |
|
Target: 5'- uGCCGGgaacgGCGuuUCGuguCUCUGCCGGUGuGg -3' miRNA: 3'- -CGGCCa----CGCu-AGU---GGGACGGCUAC-Ca -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home