miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 3' -60.8 NC_005261.1 + 33762 0.66 0.689586
Target:  5'- gGGCCCGCUcGCGGGgcccgcgGCgagCGCUg--- -3'
miRNA:   3'- -CCGGGCGGuCGCCUa------CGa--GCGGuaga -5'
23760 3' -60.8 NC_005261.1 + 107971 0.66 0.689586
Target:  5'- gGGCCaUGCaguGGCGGAucgucUGCUccagccCGCCGUCg -3'
miRNA:   3'- -CCGG-GCGg--UCGCCU-----ACGA------GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 57680 0.66 0.689586
Target:  5'- cGCCaGCCGGCGGGgcacaggGCcagcagggccUCGuCCAUCUg -3'
miRNA:   3'- cCGGgCGGUCGCCUa------CG----------AGC-GGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 82276 0.66 0.689586
Target:  5'- -uCCCGCCGcuggucGCGGAUGCagCGCCc--- -3'
miRNA:   3'- ccGGGCGGU------CGCCUACGa-GCGGuaga -5'
23760 3' -60.8 NC_005261.1 + 28566 0.66 0.689586
Target:  5'- cGGCCCGCCGGgccgaGGcgcGCgagCGCCggCg -3'
miRNA:   3'- -CCGGGCGGUCg----CCua-CGa--GCGGuaGa -5'
23760 3' -60.8 NC_005261.1 + 67048 0.66 0.683649
Target:  5'- aGCCCGCCcguguaggcgggcgcGcGCGGggGCUCGCUcgggcgGUCc -3'
miRNA:   3'- cCGGGCGG---------------U-CGCCuaCGAGCGG------UAGa -5'
23760 3' -60.8 NC_005261.1 + 82392 0.66 0.679683
Target:  5'- cGCCCaGCCcGCGGG-GC-CGUCGUCc -3'
miRNA:   3'- cCGGG-CGGuCGCCUaCGaGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 51651 0.66 0.679683
Target:  5'- gGGCCCGCCuucggcacgcuAGUGGccGCgagcugcaUCGCgGUCg -3'
miRNA:   3'- -CCGGGCGG-----------UCGCCuaCG--------AGCGgUAGa -5'
23760 3' -60.8 NC_005261.1 + 62557 0.66 0.679683
Target:  5'- aGGCgCCGCCAGC--AUGCgccccggCGCCAc-- -3'
miRNA:   3'- -CCG-GGCGGUCGccUACGa------GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 76016 0.66 0.679683
Target:  5'- uGGCgCCGCgCAGCGccgcggGCgccccgcgCGCCAUCa -3'
miRNA:   3'- -CCG-GGCG-GUCGCcua---CGa-------GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 16424 0.66 0.679683
Target:  5'- aGGCCCccucgacgGCgGGCGGcgGCUCGUagcccuUCg -3'
miRNA:   3'- -CCGGG--------CGgUCGCCuaCGAGCGgu----AGa -5'
23760 3' -60.8 NC_005261.1 + 83510 0.66 0.679683
Target:  5'- cGCgCGCCGGUGGAaGCggcacgCGCCcUCc -3'
miRNA:   3'- cCGgGCGGUCGCCUaCGa-----GCGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 81341 0.66 0.679683
Target:  5'- gGGgCCGUCGGCGGGgcggggGCUUGCgGg-- -3'
miRNA:   3'- -CCgGGCGGUCGCCUa-----CGAGCGgUaga -5'
23760 3' -60.8 NC_005261.1 + 122375 0.66 0.678691
Target:  5'- cGGCCCcaccgcgGCCuGgGGgcGCUUGCCAa-- -3'
miRNA:   3'- -CCGGG-------CGGuCgCCuaCGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 46948 0.66 0.675711
Target:  5'- cGGCCCGCgGGCcaguccgCGCCGUCg -3'
miRNA:   3'- -CCGGGCGgUCGccuacgaGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 84365 0.66 0.669743
Target:  5'- aGGCgCCGCCcGCGG--GCUCgGCC-UCg -3'
miRNA:   3'- -CCG-GGCGGuCGCCuaCGAG-CGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 49171 0.66 0.669743
Target:  5'- cGGCCa--CGGCgGGGUGCUCgGCCAg-- -3'
miRNA:   3'- -CCGGgcgGUCG-CCUACGAG-CGGUaga -5'
23760 3' -60.8 NC_005261.1 + 127804 0.66 0.669743
Target:  5'- cGGCgCCGCggCGGCGGGccGCUCGCgcUCg -3'
miRNA:   3'- -CCG-GGCG--GUCGCCUa-CGAGCGguAGa -5'
23760 3' -60.8 NC_005261.1 + 109756 0.66 0.669743
Target:  5'- cGGCUC-CCGGCcGccGCgUCGCCGUCUc -3'
miRNA:   3'- -CCGGGcGGUCGcCuaCG-AGCGGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 36958 0.66 0.669743
Target:  5'- aGGCCCGCCGcGCGGcgcagagcucgGUGCgggcuccaGCCGg-- -3'
miRNA:   3'- -CCGGGCGGU-CGCC-----------UACGag------CGGUaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.