miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 3' -60.8 NC_005261.1 + 127723 0.66 0.649784
Target:  5'- uGGCCUGCCugguAGCGGGaGCUUGgCggCg -3'
miRNA:   3'- -CCGGGCGG----UCGCCUaCGAGCgGuaGa -5'
23760 3' -60.8 NC_005261.1 + 13949 0.66 0.63978
Target:  5'- cGGCCCaGCCGcGCGGAaacgCGCgGUCa -3'
miRNA:   3'- -CCGGG-CGGU-CGCCUacgaGCGgUAGa -5'
23760 3' -60.8 NC_005261.1 + 99624 0.66 0.649784
Target:  5'- aGCgCCGCCAGCaggucgcccgGGAUGCacaugcgCGCCAg-- -3'
miRNA:   3'- cCG-GGCGGUCG----------CCUACGa------GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 122817 0.66 0.649784
Target:  5'- cGCCCGCCAGCacccgcgcUGCggCGCgGUCa -3'
miRNA:   3'- cCGGGCGGUCGccu-----ACGa-GCGgUAGa -5'
23760 3' -60.8 NC_005261.1 + 107971 0.66 0.689586
Target:  5'- gGGCCaUGCaguGGCGGAucgucUGCUccagccCGCCGUCg -3'
miRNA:   3'- -CCGG-GCGg--UCGCCU-----ACGA------GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 118386 0.66 0.649784
Target:  5'- cGGCCCgaggcGCUGGCGGccGCgggCGCCGc-- -3'
miRNA:   3'- -CCGGG-----CGGUCGCCuaCGa--GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 137865 0.66 0.656779
Target:  5'- cGCCCcuggugcucccgggGCCAGCGG-UGC-CGCCGc-- -3'
miRNA:   3'- cCGGG--------------CGGUCGCCuACGaGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 58229 0.66 0.649784
Target:  5'- cGCCCGCggCGGCGGGgucCUCgGCCAUg- -3'
miRNA:   3'- cCGGGCG--GUCGCCUac-GAG-CGGUAga -5'
23760 3' -60.8 NC_005261.1 + 59338 0.66 0.649784
Target:  5'- cGCCCGCC---GGGUcGC-CGCCGUCg -3'
miRNA:   3'- cCGGGCGGucgCCUA-CGaGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 31983 0.66 0.63978
Target:  5'- gGGCCCGCgCAccGCGGugcccGUGC-CGCCGc-- -3'
miRNA:   3'- -CCGGGCG-GU--CGCC-----UACGaGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 46799 0.66 0.63978
Target:  5'- cGCCCGUCGcggcgcgcGCGGAUgGCgcgCGCCAg-- -3'
miRNA:   3'- cCGGGCGGU--------CGCCUA-CGa--GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 43570 0.66 0.659774
Target:  5'- -uUCCGCgAGCGGcgcuucgccGUGCgcgaCGCCGUCUc -3'
miRNA:   3'- ccGGGCGgUCGCC---------UACGa---GCGGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 50511 0.66 0.659774
Target:  5'- cGCCCaGCCAGCGcagcaggGC-CGUCGUCUu -3'
miRNA:   3'- cCGGG-CGGUCGCcua----CGaGCGGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 92926 0.66 0.649784
Target:  5'- cGCCgUGCCGGCGGAgcagcUGCcCGgCGUCc -3'
miRNA:   3'- cCGG-GCGGUCGCCU-----ACGaGCgGUAGa -5'
23760 3' -60.8 NC_005261.1 + 43182 0.66 0.638779
Target:  5'- cGGCgCCGCCGGCGaggcagaggugguGcgGCUCGCgGa-- -3'
miRNA:   3'- -CCG-GGCGGUCGC-------------CuaCGAGCGgUaga -5'
23760 3' -60.8 NC_005261.1 + 182 0.66 0.656779
Target:  5'- cGCCCcuggugcucccgggGCCAGCGG-UGC-CGCCGc-- -3'
miRNA:   3'- cCGGG--------------CGGUCGCCuACGaGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 10524 0.66 0.659774
Target:  5'- gGGCCC-CgCGGCGc--GCUCGCUGUCg -3'
miRNA:   3'- -CCGGGcG-GUCGCcuaCGAGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 14443 0.66 0.63978
Target:  5'- cGGCUCGCUcgcggggcgcgcGGCGGA-GCUCGCg---- -3'
miRNA:   3'- -CCGGGCGG------------UCGCCUaCGAGCGguaga -5'
23760 3' -60.8 NC_005261.1 + 101467 0.66 0.659774
Target:  5'- aGCgCCGCCGGCGGcgGCgugaugCGCag-Ca -3'
miRNA:   3'- cCG-GGCGGUCGCCuaCGa-----GCGguaGa -5'
23760 3' -60.8 NC_005261.1 + 107200 0.66 0.63978
Target:  5'- aGCCgCGCgaaGGCGGcgugcauguacAUGCUCGCCAg-- -3'
miRNA:   3'- cCGG-GCGg--UCGCC-----------UACGAGCGGUaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.