miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23760 3' -60.8 NC_005261.1 + 43570 0.66 0.659774
Target:  5'- -uUCCGCgAGCGGcgcuucgccGUGCgcgaCGCCGUCUc -3'
miRNA:   3'- ccGGGCGgUCGCC---------UACGa---GCGGUAGA- -5'
23760 3' -60.8 NC_005261.1 + 106270 0.66 0.659774
Target:  5'- cGCugCCGCCgGGCGGcccGUGCaaaCGCCGUCg -3'
miRNA:   3'- cCG--GGCGG-UCGCC---UACGa--GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 30963 0.66 0.669743
Target:  5'- aGGCCCGCC-GCGacgGCcCGCCGc-- -3'
miRNA:   3'- -CCGGGCGGuCGCcuaCGaGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 58229 0.66 0.649784
Target:  5'- cGCCCGCggCGGCGGGgucCUCgGCCAUg- -3'
miRNA:   3'- cCGGGCG--GUCGCCUac-GAG-CGGUAga -5'
23760 3' -60.8 NC_005261.1 + 78887 0.66 0.669743
Target:  5'- cGGUUCGCCAGCaGcgGCcCGCCcUUg -3'
miRNA:   3'- -CCGGGCGGUCGcCuaCGaGCGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 182 0.66 0.656779
Target:  5'- cGCCCcuggugcucccgggGCCAGCGG-UGC-CGCCGc-- -3'
miRNA:   3'- cCGGG--------------CGGUCGCCuACGaGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 134357 0.66 0.659774
Target:  5'- cGCgCCGCCGcGCGGGggGCggCGCCG-CUg -3'
miRNA:   3'- cCG-GGCGGU-CGCCUa-CGa-GCGGUaGA- -5'
23760 3' -60.8 NC_005261.1 + 118386 0.66 0.649784
Target:  5'- cGGCCCgaggcGCUGGCGGccGCgggCGCCGc-- -3'
miRNA:   3'- -CCGGG-----CGGUCGCCuaCGa--GCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 92926 0.66 0.649784
Target:  5'- cGCCgUGCCGGCGGAgcagcUGCcCGgCGUCc -3'
miRNA:   3'- cCGG-GCGGUCGCCU-----ACGaGCgGUAGa -5'
23760 3' -60.8 NC_005261.1 + 10524 0.66 0.659774
Target:  5'- gGGCCC-CgCGGCGc--GCUCGCUGUCg -3'
miRNA:   3'- -CCGGGcG-GUCGCcuaCGAGCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 107200 0.66 0.63978
Target:  5'- aGCCgCGCgaaGGCGGcgugcauguacAUGCUCGCCAg-- -3'
miRNA:   3'- cCGG-GCGg--UCGCC-----------UACGAGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 127804 0.66 0.669743
Target:  5'- cGGCgCCGCggCGGCGGGccGCUCGCgcUCg -3'
miRNA:   3'- -CCG-GGCG--GUCGCCUa-CGAGCGguAGa -5'
23760 3' -60.8 NC_005261.1 + 74981 0.66 0.669743
Target:  5'- cGCCCGCgc-CGGGUGCagaUCGCCAa-- -3'
miRNA:   3'- cCGGGCGgucGCCUACG---AGCGGUaga -5'
23760 3' -60.8 NC_005261.1 + 84365 0.66 0.669743
Target:  5'- aGGCgCCGCCcGCGG--GCUCgGCC-UCg -3'
miRNA:   3'- -CCG-GGCGGuCGCCuaCGAG-CGGuAGa -5'
23760 3' -60.8 NC_005261.1 + 123921 0.66 0.659774
Target:  5'- cGGCCCG--AGCaGGUGCgCGCCcgCUa -3'
miRNA:   3'- -CCGGGCggUCGcCUACGaGCGGuaGA- -5'
23760 3' -60.8 NC_005261.1 + 49171 0.66 0.669743
Target:  5'- cGGCCa--CGGCgGGGUGCUCgGCCAg-- -3'
miRNA:   3'- -CCGGgcgGUCG-CCUACGAG-CGGUaga -5'
23760 3' -60.8 NC_005261.1 + 13949 0.66 0.63978
Target:  5'- cGGCCCaGCCGcGCGGAaacgCGCgGUCa -3'
miRNA:   3'- -CCGGG-CGGU-CGCCUacgaGCGgUAGa -5'
23760 3' -60.8 NC_005261.1 + 99783 0.66 0.669743
Target:  5'- cGGCCCGggucCCAgucgcggcGCGGAUgGCgaacagcgCGCCGUCc -3'
miRNA:   3'- -CCGGGC----GGU--------CGCCUA-CGa-------GCGGUAGa -5'
23760 3' -60.8 NC_005261.1 + 81341 0.66 0.679683
Target:  5'- gGGgCCGUCGGCGGGgcggggGCUUGCgGg-- -3'
miRNA:   3'- -CCgGGCGGUCGCCUa-----CGAGCGgUaga -5'
23760 3' -60.8 NC_005261.1 + 62557 0.66 0.679683
Target:  5'- aGGCgCCGCCAGC--AUGCgccccggCGCCAc-- -3'
miRNA:   3'- -CCG-GGCGGUCGccUACGa------GCGGUaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.